Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3666 114 1e-20 seq3604 95.1 9e-15 seq2154 93.3 3e-14 seq3365 82.4 6e-11 >seq3666 Length=820529 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || ||||||||||| ||||| || || || | || Sbjct 197281 AGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGT 197222 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| |||||||| |||| ||||||||||| | || | || ||| Sbjct 197221 CCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCC 197162 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| ||| | | || || || | ||| || |||| || Sbjct 197161 TTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTG 197102 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||| ||||| |||||||| Sbjct 197101 ATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 197064 >seq3604 Length=163256 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| ||||||| | || | || ||||| || || ||||| || Sbjct 66376 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66435 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||| || | || | || |||||||| || || ||| ||| Sbjct 66436 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66495 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| || || | || || |||| || || ||||| || |||| |||||| ||| Sbjct 66496 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACA 66555 Query 48756 AAAATCTGCATCGTG 48770 || || |||||| || Sbjct 66556 AAGATTTGCATCTTG 66570 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| ||||||| | || | || ||||| || || ||||| || Sbjct 65692 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65751 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||| || | || | || |||||||| || || ||| ||| Sbjct 65752 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 65811 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| || || | || || |||| || || ||||| || || | |||||| ||| Sbjct 65812 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 65871 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 65872 AAAATTTGCAT 65882 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| ||||||| | || | || ||||| || || ||||| || Sbjct 65920 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65979 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||| || | || | || |||||||| || || ||| ||| Sbjct 65980 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66039 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| || || | || || |||| || || ||||| || || | |||||| ||| Sbjct 66040 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 66099 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 66100 AAAATTTGCAT 66110 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| ||||||| | || | || ||||| || || ||||| || Sbjct 66148 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66207 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||| || | || | || |||||||| || || ||| ||| Sbjct 66208 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66267 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | ||| || || | || || |||| || || ||||| || || | |||||| ||| Sbjct 66268 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 66327 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 66328 AAAATTTGCAT 66338 >seq2154 Length=352369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 48582 TGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGT 48641 || |||||||||||||||| | ||| | || ||||| ||||| || ||||| || || Sbjct 250727 TGTATATTGTAATCAGATAATGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATTAGA 250786 Query 48642 CGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACA 48701 | |||||||||| ||||| ||| || || || || || ||||| | | | | Sbjct 250787 GGTTGTTGATCCGGGGGAATGCCTTCTTTATCTTAGATTTTCGATTTTAAATTTTCAATA 250846 Query 48702 GACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATC 48761 || ||||| | ||| | ||| | || | || || ||||| | ||||| |||||||| Sbjct 250847 GAATCTGATGACTCAATCTCGAGAATACTTGTCTTACCCGTAAGGGTTTTAACAAAAATT 250906 Query 48762 TGCATCGTG 48770 |||||| || Sbjct 250907 TGCATCTTG 250915 >seq3365 Length=261510 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||||||||||| | ||| | || ||||| ||||| || ||||| Sbjct 113849 CTCCTTCTGTATATTGTAATCAGATAATGTGCGACCATCTTCCAATTGCTTGCCAGCAAA 113790 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCC 48664 || || ||||||||||||| ||||| ||| Sbjct 113789 AATAAGACGCTGTTGATCCGGGGGAATGCC 113760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380918936438460