Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3604 159 6e-34 seq2154 136 7e-27 seq3666 134 2e-26 seq3866 109 1e-18 seq3365 107 3e-18 seq1800 86.0 1e-11 >seq3604 Length=163256 Score = 159 bits (176), Expect = 6e-34 Identities = 181/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 193119 TAAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAA 193178 |||| ||||| || ||||| | | || ||||| | || | ||||| ||||| | Sbjct 65641 TAAGAAATTTGCATTCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGA 65700 Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| ||||| || | ||| || |||||||||||||| || || |||| | Sbjct 65701 ATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGC 65760 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || |||||||| || ||||| ||||| | ||| | |||| ||||| Sbjct 65761 TGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAG 65820 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||||| || ||||| | ||| || ||||| || || || ||||| ||||| |||||| Sbjct 65821 TCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGC 65880 Query 193359 ATT 193361 ||| Sbjct 65881 ATT 65883 Score = 150 bits (166), Expect = 3e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||| | || | ||||| ||||| |||||| ||||| ||||| || | | Sbjct 65896 CGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCA 65955 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||||||||| || || |||| |||||| || || || |||||||| || Sbjct 65956 TCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTG 66015 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | |||| ||||| || ||||| || ||||| | ||| || Sbjct 66016 TCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATG 66075 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||| ||||| ||||||||| Sbjct 66076 GTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 150 bits (166), Expect = 3e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||| | || | ||||| ||||| |||||| ||||| ||||| || | | Sbjct 66124 CGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCA 66183 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||||||||| || || |||| |||||| || || || |||||||| || Sbjct 66184 TCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTG 66243 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | |||| ||||| || ||||| || ||||| | ||| || Sbjct 66244 TCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATG 66303 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||| ||||| ||||||||| Sbjct 66304 GTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||| | || | ||||| ||||| |||||| ||||| ||||| || | | Sbjct 66352 CGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCA 66411 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||||||||| || || |||| |||||| || || || |||||||| || Sbjct 66412 TCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTG 66471 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | |||| ||||| || ||||| || ||||| | ||| || Sbjct 66472 TCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATG 66531 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || ||||| ||||| |||||||| || Sbjct 66532 GTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCATCTT 66569 >seq2154 Length=352369 Score = 136 bits (150), Expect = 7e-27 Identities = 169/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| || |||||||| | || | || | ||| | ||||| || || || Sbjct 250687 ACCACCTCTTAAACGAAGTACTAAGTGAAGAGTTGACTCCTGT---ATATTGTAATCAGA 250743 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | | ||| || ||||| || || |||||||||| |||||||| || || Sbjct 250744 TAATGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATTAGAGGTTGTTGATCCGGGGG 250803 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||||||||||| ||||| | ||||| |||| ||||| ||| || ||||||| Sbjct 250804 AATGCCTTCTTTATCTTAGATTTTCGATTTTAAATTTTCAATAGAATCTGATGACTCAAT 250863 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||| | | || ||||| || || ||||| ||||| |||||||| || Sbjct 250864 CTCGAGAATACTTGTCTTACCCGTAAGGGTTTTAACAAAAATTTGCATCTT 250914 >seq3666 Length=820529 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||| | || | |||| || | |||| ||||| ||| || Sbjct 197299 ATTTGCATACCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTG 197240 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | || || | ||| ||||||||||| || || | ||||||| Sbjct 197239 TAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGA 197180 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| ||||| | ||| | |||| ||| | ||| || Sbjct 197179 TCTGGTGGGATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGAT 197120 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||||||||| | ||| ||||||||||| || | ||||| ||||| || ||||| || Sbjct 197119 GACTCAACTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 197061 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||| | || | |||| || | |||| ||||| ||| || Sbjct 197527 ATTTGCATACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTG 197468 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | || || | ||| ||||||||||| || || | ||||| Sbjct 197467 TAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGG 197408 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| || | |||| ||| | ||| || Sbjct 197407 TCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGAT 197348 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | ||||| || || ||||| || || ||||| || |||||||| Sbjct 197347 GATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||| | || | |||| || | |||| ||||| ||| || Sbjct 197755 ATTTGCATACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTG 197696 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | || || | ||| ||||||||||| || || | ||||| Sbjct 197695 TAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGG 197636 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| || | |||| ||| | ||| || Sbjct 197635 TCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGAT 197576 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | ||||| || || ||||| || || ||||| || |||||||| Sbjct 197575 GATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||| | || | |||| || | |||| ||||| ||| || Sbjct 197983 ATTTGCATACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTG 197924 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | || || | ||| ||||||||||| || || | ||||| Sbjct 197923 TAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGG 197864 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| || |||| || | |||| ||| | ||| || Sbjct 197863 TCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGAT 197804 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | ||||| || || ||||| || || ||||| || |||||||| Sbjct 197803 GATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||||||||| || || | ||||| || || || || |||||||| Sbjct 198130 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 198071 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | |||| ||| | ||| || || || ||||| | ||||| Sbjct 198070 TCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATG 198011 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || ||||| || |||||||| Sbjct 198010 GTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 >seq3866 Length=782398 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| || || || || | ||| || | || || ||||| || || || | Sbjct 247980 ATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAACGT 247921 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || || |||||||||||||| ||||| | ||| | |||| ||||| Sbjct 247920 TGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCGATAGTG 247861 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || |||||||| || || || || || || || ||||| || ||||| || || |||||| Sbjct 247860 TCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATTTGC 247801 Query 193359 ATTTT 193363 || || Sbjct 247800 ATGTT 247796 >seq3365 Length=261510 Score = 107 bits (118), Expect = 3e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||| | ||||| |||| ||||| ||| || |||||||| || Sbjct 112598 CCTTCTTTATCTTGGATTTTCGATTTTACATTTTCAATAGAATCTGATGACTCAACCTCG 112539 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || |||||||| || || ||||| ||||| |||||||| || Sbjct 112538 AGAGTAATTGTTTTACCCGTGAGGGTTTTAACAAAAATTTGCATCTT 112492 >seq1800 Length=381758 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||||||||| ||||||| ||| | |||| ||| | ||| || ||||| || || Sbjct 273724 CCTTCTTTATCTTGAATTTTGGATTTCACATTTTCAATTGAATCCGATGACTCTACCTCG 273665 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAA--AAT 193374 ||||| || ||||| || |||| || || || || || |||||||| || || ||| Sbjct 273664 AGAGTGATCGTTTTCCCAGTTAAGGTCTTCACGAAGATCTGCATTTTGCTAAAAATCAAT 273605 Query 193375 AATTATTTTAAATA 193388 || ||| | |||| Sbjct 273604 AAATATAGTTAATA 273591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899609192366400