Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3866 109 8e-19 seq40 104 3e-17 seq2154 87.8 3e-12 >seq3866 Length=782398 Score = 109 bits (120), Expect = 8e-19 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | ||||| | || || || || || || | || ||||| | Sbjct 247796 AACATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCT 247855 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| ||| || ||| |||||| |||||||||||||| || || || || Sbjct 247856 TCTGACACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGAT 247915 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||| | ||||| |||||||| |||||| | ||||| || |||||| Sbjct 247916 CAACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTAT 247975 Query 156000 AATATATCCAAA 156011 | | ||||||| Sbjct 247976 A--ACATCCAAA 247985 >seq40 Length=47542 Score = 104 bits (114), Expect = 3e-17 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 18182 TCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttttt 18241 |||||||| || || | || || || || ||||| || ||||||| |||| ||| || Sbjct 40231 TCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCTTC 40172 Query 18242 AGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCT 18301 | |||||||| | || ||||| | ||| || |||||||| |||||| || || || Sbjct 40171 ATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATGCA 40112 Query 18302 ATTAATCTTTCAGCAAAACTGTATTTATT---GCTCAGTATCCATTTTTGTGCCCATTCT 18358 | |||||||||| ||||| | |||| | ||| |||||| || | ||||| ||| Sbjct 40111 ACTAATCTTTCACCAAAAGTCGCTTTACTATCGCT---TATCCACTTCAGAGCCCAATCT 40055 Query 18359 CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAA 18403 | | | |||||| || | || ||||||||||| ||| Sbjct 40054 GCCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAA 40010 >seq2154 Length=352369 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| ||||||| | || || || || | || | || | || Sbjct 250914 AAGATGCAAATTTTTGTTAAAACCCTTACGGGTAAGACAAGTATTCTCGAGATTGAGTCA 250855 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || ||| |||| ||| | ||| ||||| |||||||||||||||| || || || Sbjct 250854 TCAGATTCTATTGAAAATTTAAAATCGAAAATCTAAGATAAAGAAGGCATTCCCCCGGAT 250795 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | |||| ||| || ||||| | |||||| | || ||||| ||||| Sbjct 250794 CAACAACCTCTAATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACATTATCTGATTAC 250735 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 |||||| | ||| | || ||||| ||||| | | |||||||| |||| Sbjct 250734 AATATA---CAGGAGTCAACTCTTCACTTAGTACTTCGTTTAAGAGGTGGTG 250686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731835223432000