Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3604 178 3e-39 seq40 154 3e-32 seq3666 145 2e-29 seq2154 145 2e-29 seq3866 105 1e-17 seq3365 95.1 2e-14 seq1800 86.0 1e-11 >seq3604 Length=163256 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||| | |||||| || | |||| ||||| ||||| || ||| Sbjct 65653 ATTCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA 65712 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| ||||||||||| || || ||||| |||| |||||| || ||| Sbjct 65713 GATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGT 65772 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||| ||||| ||||| || || |||||| Sbjct 65773 GGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 65832 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| |||||||| ||||| | ||||| | ||| || |||||| Sbjct 65833 ACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||| | |||||| || | |||| ||||| ||||| || ||| Sbjct 65881 ATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA 65940 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| ||||||||||| || || ||||| |||| |||||| || ||| Sbjct 65941 GATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGT 66000 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||| ||||| ||||| || || |||||| Sbjct 66001 GGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 66060 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| |||||||| ||||| | ||||| | ||| || |||||| Sbjct 66061 ACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||| | |||||| || | |||| ||||| ||||| || ||| Sbjct 66109 ATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA 66168 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| ||||||||||| || || ||||| |||| |||||| || ||| Sbjct 66169 GATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGT 66228 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||| ||||| ||||| || || |||||| Sbjct 66229 GGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 66288 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| |||||||| ||||| | ||||| | ||| || |||||| Sbjct 66289 ACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||| | |||||| || | |||| ||||| ||||| || ||| Sbjct 66337 ATTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCA 66396 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| ||||||||||| || || ||||| |||| |||||| || ||| Sbjct 66397 GATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGT 66456 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| |||||| ||| ||||| ||||| || || |||||| Sbjct 66457 GGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 66516 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| |||||||| ||||| | ||||| | ||| || ||||| || Sbjct 66517 ACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCATCTT 66569 >seq40 Length=47542 Score = 154 bits (170), Expect = 3e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || ||||| || | ||||| || |||||||| |||||||||||||||| || | Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCT 40174 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | |||||||| || |||||||| | ||| || |||||||| || || ||||||| Sbjct 40173 TCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATG 40114 Query 49966 CTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTG 50025 | | || |||| | ||||| | |||| ||| |||||| || | ||||||||||| Sbjct 40113 CAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTG 40054 Query 50026 CtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 | |||||||| | | | || || |||| ||||| |||||||| Sbjct 40053 CCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAA 40011 Score = 96.9 bits (106), Expect = 7e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||||||| ||||||||| ||||||| | ||||| ||||||||| |||||| Sbjct 39901 ATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAACCCATAAAAA 39842 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 ||| || || | |||||||| | | ||||||||||| | ||| ||| ||| Sbjct 39841 CATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTTTCATTGACA 39782 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCT 50285 |||||||| || || || || |||||||| |||| ||||| || ||||| ||| Sbjct 39781 ATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACGTTCATCATCA 39722 Query 50286 TTTAAATTTTCCCAAGATTCAAGATC 50311 | || | | |||| |||||||| Sbjct 39721 GTCAATCTATTCCAATCATCAAGATC 39696 >seq3666 Length=820529 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || || || | |||| ||||| || || || || Sbjct 197293 ATACCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCG 197234 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| | || || | ||| || || |||||||| || | ||||||||| ||| Sbjct 197233 GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGT 197174 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| ||||| || ||||| || || || Sbjct 197173 GGGATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCA 197114 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || ||||||||||| || ||||| | ||| |||||||| || Sbjct 197113 ACTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTT 197061 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || || || | |||| ||||| || || || || Sbjct 197521 ATACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCG 197462 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| | || || | ||| || || |||||||| || | ||||| || ||| Sbjct 197461 GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGT 197402 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| || ||||| || |||||| Sbjct 197401 GGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCT 197342 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || || || | || || | || || ||||| Sbjct 197341 ACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || || || | |||| ||||| || || || || Sbjct 197749 ATACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCG 197690 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| | || || | ||| || || |||||||| || | ||||| || ||| Sbjct 197689 GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGT 197630 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| || ||||| || |||||| Sbjct 197629 GGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCT 197570 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || || || | || || | || || ||||| Sbjct 197569 ACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| || || || || | |||| ||||| || || || || Sbjct 197977 ATACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCG 197918 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| | || || | ||| || || |||||||| || | ||||| || ||| Sbjct 197917 GAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGT 197858 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| || ||||| || |||||| Sbjct 197857 GGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCT 197798 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| || || || | || || | || || ||||| Sbjct 197797 ACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| ||||| || || || || | ||||| || || ||| || || || || Sbjct 198202 CCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAA 198143 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| ||| | || || | ||| || || |||||||| || | ||||| || ||||| Sbjct 198142 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 198083 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| || || || ||||| || ||||| || ||||||||| Sbjct 198082 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 198023 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||| || || || | || || | || || ||||| Sbjct 198022 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 >seq2154 Length=352369 Score = 145 bits (160), Expect = 2e-29 Identities = 171/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | ||| | |||||| || | ||| | ||| | ||||| |||||||| Sbjct 250687 ACCACCTCTTAAACGAAGTACTAAGTGAAGAGTTGACTCCTGT---ATATTGTAATCAGA 250743 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||| || |||| |||||||| || |||||||| |||| |||||||| || || Sbjct 250744 TAATGTACGACCATCTTCCAATTGCTTGCCAGCAAAAATTAGAGGTTGTTGATCCGGGGG 250803 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||||||||||| ||||| ||||| ||| ||||||||||| || || | Sbjct 250804 AATGCCTTCTTTATCTTAGATTTTCGATTTTAAATTTTCAATAGAATCTGATGACTCAAT 250863 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||| || | || ||||| || | ||||||| ||| || ||||| || Sbjct 250864 CTCGAGAATACTTGTCTTACCCGTAAGGGTTTTAACAAAAATTTGCATCTT 250914 >seq3866 Length=782398 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| || || || ||| |||| || | || || || || ||||| || | Sbjct 247981 GATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATCAAACG 247922 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||||| ||||| || |||||||||||||| |||||| ||| ||||| |||| Sbjct 247921 TTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCGATAGT 247862 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || || || || ||||| || || || | ||||| | || || || Sbjct 247861 GTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATTTG 247802 Query 192534 CATTTT 192539 ||| || Sbjct 247801 CATGTT 247796 >seq3365 Length=261510 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||||||||| ||||| ||||||||| ||||||||||| || || || || Sbjct 112598 CCTTCTTTATCTTGGATTTTCGATTTTACATTTTCAATAGAATCTGATGACTCAACCTCG 112539 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||||| |||||||| || | ||||||| ||| || ||||| || Sbjct 112538 AGAGTAATTGTTTTACCCGTGAGGGTTTTAACAAAAATTTGCATCTT 112492 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | || | |||||| || | ||| | ||| || ||||| |||||||| Sbjct 113885 ACCACCTCTTAAGCGAAGTACTAAGTGAAGAGTTGACTCCTTCTGTATATTGTAATCAGA 113826 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||| || |||| |||||||| || |||||||| || | | ||||||||| || || Sbjct 113825 TAATGTGCGACCATCTTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGATCCGGGGG 113766 Query 192429 TATTCCT 192435 || ||| Sbjct 113765 AATGCCT 113759 >seq1800 Length=381758 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 192433 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCT 192492 |||||||||||||| ||||| ||| ||||| || ||||| || || ||||| || Sbjct 273724 CCTTCTTTATCTTGAATTTTGGATTTCACATTTTCAATTGAATCCGATGACTCTACCTCG 273665 Query 192493 AGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAA 192547 ||||| || ||||| |||||||| || || | || ||||||||||| || ||| Sbjct 273664 AGAGTGATCGTTTTCCCAGTTAAGGTCTTCACGAAGATCTGCATTTTGCTAAAAA 273610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984429293127000