Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3642 96.9 1e-14 seq35 89.7 2e-12 seq2 89.7 2e-12 >seq3642 Length=146887 Score = 96.9 bits (106), Expect = 1e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||||||| ||||||||||| ||||| ||||| || | | ||| |||| || || | Sbjct 26985 CTTTTTTTGCCAACAGCATCGATTTCATCAATAAATAATATACATGGAGCATGTTTACGA 26926 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || |||| ||| | ||||| || | |||| |||| ||||||| ||||||| | || Sbjct 26925 GCCATTGTAAACATATCTCTGACTCTTGATGGCCCAACACCAACAAACATTTCCAAGAAC 26866 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 || ||| | || ||| | |||| |||| |||||| || || ||| | || || Sbjct 26865 TCCGAACCAGAAACTGATAAAAATGGAACATCTGCTTCACCAGCCGTTGCTTTGGCAAGT 26806 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 | || ||||| || || || ||||| Sbjct 26805 AACGTTTTACCAGTACCCGGAGGTCC 26780 >seq35 Length=46307 Score = 89.7 bits (98), Expect = 2e-12 Identities = 213/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 252376 TTAAATAGGACACTATCCTCCTGATTATAACCAGAATGACTCATAATGGCTACAATA-AC 252434 || |||| |||||||| || ||||||||||||| || || | ||| || |||||| | Sbjct 17888 TTTAATATTACACTATCTTCTTGATTATAACCAGTATAACATAAAATTGCCACAATAGAA 17829 Query 252435 TTGCTCGCCAGATGGAA-TGGTATTGAGTTTGATAATATCCATAAGACGAGTATCAACAA 252493 || | |||| ||| | | | | | | | || |||||| | || |||| Sbjct 17828 TTAATA-CCAGCTGGCAGTTCTCTGAAACGTAAGTAT-TCCATAGATCTTGTTGTTACAA 17771 Query 252494 GCGGTCTCATCGGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTG 252553 | ||| | || ||| | ||||| | ||| ||||||| | | || | |||| | Sbjct 17770 GAGGTTTATGTGGATAATAAAGAACGTGAGCTAAGGTATCCATTCGAACATGAAAATTGG 17711 Query 252554 TAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACT 252613 | | || | ||| | || || || ||||||||||| ||||| |||||||| ||| || Sbjct 17710 TTATGTAAACACCCATGGCTTGTTTACCCATAGCACTTTGGTATGTATTTCTAGGACTCT 17651 Query 252614 GATTGTTTTCCGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAA 252673 |||||| || ||||| |||||| || || ||| || || || | ||| |||| Sbjct 17650 GATTGTGATCAGGGAATGGAATGATGGACGCACAAACTCCCAATATCATAGCTGGATGAA 17591 Query 252674 TTTCACAGTGACTGTAA 252690 ||||||| || ||||| Sbjct 17590 TTTCACAATGTGTGTAA 17574 >seq2 Length=2033018 Score = 89.7 bits (98), Expect = 2e-12 Identities = 118/163 (72%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 106917 ACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAAT---TAACTTAC 106973 |||||||||||||||| || || || |||| |||||| | | ||| ||| | | Sbjct 1620362 ACGAACTCATACCATAAAATAATTTACACTTAGTACCATTTGGTTTAATAGTTAATTCGC 1620421 Query 106974 CTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCAC 107033 || ||||| ||| ||||| || | | || |||| ||| || ||||| || || ||| Sbjct 1620422 CTCCATTTTGATCATGTCCAGCTAGCATTCCACCAAGCATAACAAAATCTGCTCCAGCAC 1620481 Query 107034 CGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATC 107076 |||||||||| || | ||| ||||| ||| | ||||||||| Sbjct 1620482 CGAATGCTTTGGCGACATCTCCAGGACAAACACATCCACCATC 1620524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471741792194740