Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1079 105 8e-17 seq1207 96.9 4e-14 >seq1079 Length=469167 Score = 105 bits (116), Expect = 8e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| ||||||| ||| | ||||| ||||| ||||||||||| | | | || Sbjct 7870 TGGCCAATTCGCCGGGCAACAAAAGGCGGACGGCCGTCTGGATCTCTCTACTAGTTAACG 7929 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | | | ||||| | || |||| || ||||||||| | ||||||| |||| | || Sbjct 7930 TCCTACCATTGTTGTATTGGACCAGGCGACCGGCCTCGCCGGCGATGCGCTCGAAAAGGT 7989 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||| ||| | ||| |||| ||| ||||||||||| Sbjct 7990 CGTTGACGAAGCTGTTCATGATGCTCATGGCCTTTGACGAGACGCCGGTGTCGGGGTGCA 8049 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 | || |||||||| || |||||| Sbjct 8050 CTTGTTTGAGCACTTTATAGATG 8072 >seq1207 Length=1223737 Score = 96.9 bits (106), Expect = 4e-14 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| ||| || ||| | || || |||||||||||||| || || || ||| | Sbjct 772183 TGGCCAATTCTCCAGGCAACAAGAGTCGGACGGCGGTCTGGATTTCCCGGCTGGTGATGG 772124 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| |||| ||||||| | | || ||| ||||||| |||| || || Sbjct 772123 TCGAACGCTTGTTGTAGTGGACCAGACGACTAGATTCAGTGGCGATGCGCTCGAACAGGT 772064 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||| || |||||||| ||| | ||| |||| ||| ||||||||| | Sbjct 772063 CGTTGATGAAGCTGTTCATGATGCTCATGGCCTTCGAAGAGACGCCGGTGTCGGGGTGTA 772004 Query 1254526 CCTGCTTGAGCACCTTGTAGATG--AACGACGAGTACGA 1254562 | || || || || ||||| ||| |||| |||||||| Sbjct 772003 CTTGTTTCAGTACTTTGTAAATGTAAACG--GAGTACGA 771967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106809299974340