Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3666 140 3e-28 seq3604 123 2e-23 seq3866 113 4e-20 seq48 95.1 1e-14 seq1800 93.3 4e-14 seq2 82.4 7e-11 >seq3666 Length=820529 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| | || ||||||||||| || | ||||| || | | Sbjct 197064 ATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCT 197123 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || ||| || ||||||||||| ||||| || || || |||||| Sbjct 197124 GATTCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCAGATCAA 197183 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || ||||||||||||||||| || || || || || || ||| | || || || || Sbjct 197184 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGA-CGGACGCACACTTTCCGACTACAA 197242 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||||| ||||| || || |||||||||||||| Sbjct 197243 CATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCG 197278 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || | ||||||||| | | Sbjct 197292 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197351 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || |||||||||||||||||||| || || || || ||| Sbjct 197352 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197411 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||||||||||||||| || || || || || || ||| | || || || || Sbjct 197412 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGA-CGGACGCACACTTTCCGACTACAA 197470 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||||| ||||| || || |||||||| ||||| Sbjct 197471 CATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCG 197506 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || | ||||||||| | | Sbjct 197520 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197579 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || |||||||||||||||||||| || || || || ||| Sbjct 197580 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197639 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||||||||||||||| || || || || || || ||| | || || || || Sbjct 197640 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGA-CGGACGCACACTTTCCGACTACAA 197698 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||||| ||||| || || |||||||| ||||| Sbjct 197699 CATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCG 197734 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || | ||||||||| | | Sbjct 197748 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197807 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || |||||||||||||||||||| || || || || ||| Sbjct 197808 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197867 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||||||||||||||| || || || || || || ||| | || || || || Sbjct 197868 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGA-CGGACGCACACTTTCCGACTACAA 197926 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||||||| ||||| || || |||||||| ||||| Sbjct 197927 CATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCG 197962 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || | ||||||||| | | Sbjct 197976 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 198035 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | |||| || || |||||||||||||||||||| || || || || ||| Sbjct 198036 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 198095 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||||||||||||||| || || || || || || ||| | || || || || Sbjct 198096 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGA-CGGACGCACACTTTCCGACTACAA 198154 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || |||||||||||||| Sbjct 198155 CATCCAGAAGGAATCTACTCTTCACTTGGTGTTGCG 198190 >seq3604 Length=163256 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | ||||| || || || ||||| || || | ||||||||| | | Sbjct 66567 GATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCTTC 66508 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | |||| || ||| || ||||||||||| |||||||| || || || || Sbjct 66507 GGACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCA 66448 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || |||||||| ||||| ||||| |||| ||| | | | || || || || Sbjct 66447 ACAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAA 66388 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| ||||| || | || | || ||||| Sbjct 66387 TATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 66340 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| || || | ||||||||| | | Sbjct 65882 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 65823 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||| || ||||||||||| |||||||| || || || ||| Sbjct 65822 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 65763 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| ||||| |||| ||| | | | || || || || Sbjct 65762 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 65703 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| ||||| ||||| || Sbjct 65702 ATTCAGAAAGAATCTACACTTCACTTAGT 65674 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| || || | ||||||||| | | Sbjct 66110 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66051 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||| || ||||||||||| |||||||| || || || ||| Sbjct 66050 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 65991 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| ||||| |||| ||| | | | || || || || Sbjct 65990 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 65931 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| ||||| || | || | || ||||| Sbjct 65930 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 65884 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || || ||||| || || | ||||||||| | | Sbjct 66338 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66279 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||| || ||||||||||| |||||||| || || || ||| Sbjct 66278 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 66219 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| ||||| |||| ||| | | | || || || || Sbjct 66218 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 66159 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| ||||| || | || | || ||||| Sbjct 66158 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGG 66112 >seq3866 Length=782398 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || || || || || || || || || || | | Sbjct 247799 ATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTCT 247858 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| || || ||||| |||||||| || || ||||||||| Sbjct 247859 GACACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 247918 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||||||||||| ||||| || ||||| || ||| | | |||| ||||||||| Sbjct 247919 CAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTATAAC 247978 Query 24884 ATTCAAAAGG 24893 || ||||||| Sbjct 247979 ATCCAAAAGG 247988 >seq48 Length=686774 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 139132 ATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGG 139191 ||||| | ||| | |||||||||||| || ||||| | ||||| ||||||||||||| Sbjct 303721 ATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTGCTTTTTGCA 303780 Query 139192 TTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 || ||||||||||| || |||| ||| || | |||||||| | ||| Sbjct 303781 TTGCAAGCATCTTTATACAGCACATATGGCATACCAGTTTCAATTTG 303827 >seq1800 Length=381758 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || ||||| ||||| ||||||||||| ||||| || || || || || ||| | | Sbjct 276022 AGGTATTCCTCCGGATCAGCAACGTTTGATATTTGCTGGCAAGCAACTTGAAGATGGGCG 276081 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | |||||||||| ||||||||||| ||||| || || |||||||| | ||||| | Sbjct 276082 TACTCTGTCAGATTACAACATTCAAAAAGAATCTACCCTCCACTTGGTTCTTAGATTGAG 276141 Query 24925 CGGAGG 24930 || || Sbjct 276142 AGGTGG 276147 >seq2 Length=2033018 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193 ||| | ||| | ||| |||||||| || ||||| | ||||| ||||||||||| || Sbjct 1646263 TTCAGTACAAAGATTGCTACACTTAATTGTACCAAGATTTTTCTGATTGCTTTTAGCATT 1646204 Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||| |||||||| || | ||||||||| | |||||||| | ||| Sbjct 1646203 ACATGCATCTTTATACAACATATACGGCATACCAGTTTCGATTTG 1646159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449874992645600