Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2090 120 5e-21 seq792 120 5e-21 seq1207 118 2e-20 seq1814 109 9e-18 >seq2090 Length=371202 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| || || |||||||||| | |||| ||| ||| ||| Sbjct 61922 TGTACTTGGTCACGGCCTTGGTGCCTTCACTGACGGCGTGCTTTGCCAATTCACCGGGCA 61981 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| || ||||| || ||| | || || |||||||| | Sbjct 61982 ACAAAAGTCGGACGGCTGTTTGGATTTCCCGGCTAGTAATGGTCGACCGCTTGTTGTAGT 62041 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || | | |||||| ||||||| |||| | |||||||| || ||||| Sbjct 62042 GTGCCAGACGACTAGATTCGGTGGCGATGCGCTCGAAAAGATCGTTGACGAAACTGTTCA 62101 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| |||| || | ||| |||||| || || ||||| | ||| |||| Sbjct 62102 TGATGCTCATCGCTTTGGATGACACACCCGTGTCGGGATGTACTTGCTTCAACACTTTGT 62161 Query 1485710 A 1485710 | Sbjct 62162 A 62162 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||||||||| || || || |||||||||| | |||| ||| ||| ||| Sbjct 329181 TGTATTTTGTGACGGCCTTTGTGCCTTCGCTGACGGCGTGCTTAGCCAATTCACCGGGCA 329240 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || ||||| ||||| || ||| || || || |||||||| Sbjct 329241 GCAAGAGTCGGACTGCGGTTTGGATTTCCCGGCTGGTAATGGTCGAACGCTTGTTGTAAT 329300 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || | || |||| ||||||| |||| | ||||||||| || ||||| Sbjct 329301 GAGCCAGACGACTGGATTCGGCAGCGATGCGCTCGAAAAGGTCGTTGACGAAGCTGTTCA 329360 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||| ||| ||||||||| || ||||| | ||| |||| Sbjct 329361 TGATGCTCATGGCCTTTGAGGAGACGCCAGTGTCGGGGTGAACTTGCTTCAACACTTTGT 329420 Query 1485710 A 1485710 | Sbjct 329421 A 329421 Score = 111 bits (122), Expect = 2e-18 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| || || ||| |||||| |||||| ||| ||| ||| Sbjct 340521 TGTACTTGGTCACGGCCTTGGTGCCTTCACTGACCGCGTGCTTGGCCAATTCACCGGGCA 340580 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| || ||||| || ||| || ||| || |||||||| | Sbjct 340581 ACAAAAGCCTGACGGCAGTTTGGATTTCCCGGCTGGTGATGGTCGAACGCTTGTTGTAGT 340640 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || | || |||| | ||||||| || | || |||||||| || ||||| Sbjct 340641 GGGCCAAACGACTGGATTCGGCGGCGATGCGCTCAAACAGATCGTTGACGAAACTGTTCA 340700 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||| ||| ||||| ||||| ||||| | ||| |||| Sbjct 340701 TGATGCTCATGGCCTTTGAAGAGACGCCGGTATCGGGATGCACTTGCTTCAACACTTTGT 340760 Query 1485710 A 1485710 | Sbjct 340761 A 340761 >seq792 Length=12188 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| || || |||||||||| |||||| ||| ||| ||| Sbjct 8914 TGTACTTGGTCACGGCCTTGGTGCCTTCACTGACGGCGTGCTTGGCCAATTCACCGGGCA 8973 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| || ||||| || ||| || ||| || |||||||| | Sbjct 8974 ACAAAAGCCTGACGGCTGTTTGGATTTCCCGGCTGGTGATGGTCGAACGCTTGTTGTAGT 9033 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || | || |||| | ||||||| |||| || |||||||| || ||||| Sbjct 9034 GGGCCAGACGACTGGATTCGGCGGCGATGCGCTCGAACAGATCGTTGACGAAACTGTTCA 9093 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| || | || |||||| || || || || | ||| |||| Sbjct 9094 TGATGCTCATGGCTTTGGATGACACACCGGTGTCGGGATGTACTTGTTTCAACACTTTGT 9153 Query 1485710 A 1485710 | Sbjct 9154 A 9154 >seq1207 Length=1223737 Score = 118 bits (130), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| ||||||||||| || || ||||||||| |||||| ||| || ||| Sbjct 772225 TGTATTTGGTAACGGCCTTGGTTCCTTCACTGACGGCGTGTTTGGCCAATTCTCCAGGCA 772166 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || |||||||||||||| || ||| || ||| || |||||||| | Sbjct 772165 ACAAGAGTCGGACGGCGGTCTGGATTTCCCGGCTGGTGATGGTCGAACGCTTGTTGTAGT 772106 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || | | || ||| ||||||| |||| || |||||||| || ||||| Sbjct 772105 GGACCAGACGACTAGATTCAGTGGCGATGCGCTCGAACAGGTCGTTGATGAAGCTGTTCA 772046 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||| ||| ||||||||| || || || || || |||| Sbjct 772045 TGATGCTCATGGCCTTCGAAGAGACGCCGGTGTCGGGGTGTACTTGTTTCAGTACTTTGT 771986 Query 1485710 AAA 1485712 ||| Sbjct 771985 AAA 771983 >seq1814 Length=2957 Score = 109 bits (120), Expect = 9e-18 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| || ||||| || || |||||| |||||| ||||||| ||| Sbjct 1264 TGTACTTGGTGACGGCTTTAGTACCTTCACTTACAGCGTGCTTGGCCAATTCGCCGGGCA 1323 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || ||||| ||||| || ||| || ||| || |||||||| | Sbjct 1324 ACAAGAGTCGGACAGCGGTTTGGATTTCCCGGCTGGTGATGGTCGAACGCTTGTTGTAGT 1383 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || | || || | | || || |||| | ||||||||| || ||||| Sbjct 1384 GAGCCAGACGACTGGATTCAGAAGCAATCCGTTCGAAAAGGTCGTTGACGAAGCTGTTCA 1443 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||| | ||| ||| |||||||| || || | ||| |||| Sbjct 1444 TGATGCTCATTGCCTTTGAGGAAACGCCGGTGTCTGGGTGCACTTGTTTCAACACTTTGT 1503 Query 1485710 AAA 1485712 ||| Sbjct 1504 AAA 1506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915818774264780