Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3666 116 2e-21 seq3866 93.3 3e-14 seq3604 93.3 3e-14 >seq3666 Length=820529 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| || || |||||||| ||||| || || |||| | || || Sbjct 197500 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCA 197441 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| ||||| |||||| | || | || || ||||| | Sbjct 197440 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 197381 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | |||||||||||| Sbjct 197380 ATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTT 197321 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| ||||| ||||| Sbjct 197320 CCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| || || |||||||| ||||| || || |||| | || || Sbjct 197728 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCA 197669 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| ||||| |||||| | || | || || ||||| | Sbjct 197668 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 197609 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | |||||||||||| Sbjct 197608 ATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTT 197549 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| ||||| ||||| Sbjct 197548 CCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| || || |||||||| ||||| || || |||| | || || Sbjct 197956 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCA 197897 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| ||||| |||||| | || | || || ||||| | Sbjct 197896 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 197837 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | |||||||||||| Sbjct 197836 ATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTT 197777 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| ||||| ||||| Sbjct 197776 CCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || |||||||| ||||| ||||| || || |||| | || || Sbjct 198184 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCA 198125 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| ||||| |||||| | || | || || ||||| | Sbjct 198124 AGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGG 198065 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || || | | || || ||| | || || || | |||||||||||| Sbjct 198064 ATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTT 198005 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| ||||| ||||| Sbjct 198004 CCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| || || |||||||| ||||| || || |||| | || || Sbjct 197272 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCA 197213 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||| ||||||| || || || ||| | || | || |||||||| | Sbjct 197212 AGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGG 197153 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| ||| || | | || || ||| | ||| || || | || || || || Sbjct 197152 ATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTTTTA 197093 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | || || ||||||||||||||| Sbjct 197092 CCAGTCAAAGTTTTGACAAAGATCTGCATG 197063 >seq3866 Length=782398 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || |||||||| ||||| | | || |||| || || ||||| |||||||||| Sbjct 247988 CCTTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGA 247929 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| || || | || | || || || || | ||||| |||||| | Sbjct 247928 TCAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTT 247869 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | ||| | |||||| |||| ||| |||||||| || || ||||| || || | Sbjct 247868 CGATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGA 247809 Query 34968 AGATCTGCATG 34978 | || |||||| Sbjct 247808 AAATTTGCATG 247798 >seq3604 Length=163256 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || ||||| |||| | || |||| |||| ||| |||||||||||| Sbjct 66376 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66435 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||| || |||||| | || | || |||||||| | ||||| ||| || | Sbjct 66436 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66495 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || || || | || || || | || ||||| || || || || || || ||| Sbjct 66496 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACA 66555 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 66556 AAGATTTGCAT 66566 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || ||||| |||| | || |||| |||| ||| |||||||||||| Sbjct 65692 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65751 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||| || |||||| | || | || |||||||| | ||||| ||| || | Sbjct 65752 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 65811 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || || || | || || || | || ||||| || || || || || || ||| Sbjct 65812 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 65871 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 65872 AAAATTTGCAT 65882 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || ||||| |||| | || |||| |||| ||| |||||||||||| Sbjct 65920 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65979 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||| || |||||| | || | || |||||||| | ||||| ||| || | Sbjct 65980 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66039 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || || || | || || || | || ||||| || || || || || || ||| Sbjct 66040 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 66099 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 66100 AAAATTTGCAT 66110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||| || ||||| |||| | || |||| |||| ||| |||||||||||| Sbjct 66148 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66207 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||| || |||||| | || | || |||||||| | ||||| ||| || | Sbjct 66208 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTT 66267 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || || || | || || || | || ||||| || || || || || || ||| Sbjct 66268 TCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACA 66327 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 66328 AAAATTTGCAT 66338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325676843088380