Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3666 143 2e-29 seq3604 125 6e-24 seq3866 118 8e-22 seq1800 104 2e-17 >seq3666 Length=820529 Score = 143 bits (158), Expect = 2e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| ||||| || ||||||||||||||||| || || | || ||||| Sbjct 197279 ACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCC 197220 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || || ||| | ||||| | || ||||| || || ||||| || || Sbjct 197219 GTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTT 197160 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| ||| |||| | | ||||| || ||||| | ||| || Sbjct 197159 GTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGAT 197100 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 |||||| ||||| || ||||| ||||| |||||||| || || Sbjct 197099 AGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTTGAA 197058 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| ||||| || ||||||||||||||||| || || | || ||||| Sbjct 197507 ACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCC 197448 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || || ||| | ||||| | ||| || || || || ||||| ||||| Sbjct 197447 GTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTT 197388 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| |||| | | ||||| ||||||||| | ||||| Sbjct 197387 GTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTAT 197328 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || || ||||| Sbjct 197327 GGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| ||||| || ||||||||||||||||| || || | || ||||| Sbjct 197735 ACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCC 197676 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || || ||| | ||||| | ||| || || || || ||||| ||||| Sbjct 197675 GTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTT 197616 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| |||| | | ||||| ||||||||| | ||||| Sbjct 197615 GTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTAT 197556 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || || ||||| Sbjct 197555 GGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| ||||| || ||||||||||||||||| || || | || ||||| Sbjct 197963 ACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCC 197904 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || || ||| | ||||| | ||| || || || || ||||| ||||| Sbjct 197903 GTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTT 197844 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| |||| | | ||||| ||||||||| | ||||| Sbjct 197843 GTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTAT 197784 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || || || || ||||| Sbjct 197783 GGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 Score = 109 bits (120), Expect = 4e-19 Identities = 166/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 29556 TTGTCCTCC-CCTC--AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA 29612 |||| |||| |||| | ||||| |||||| ||||| || ||||| || || ||||| || Sbjct 198209 TTGTGCTCCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTA 198150 Query 29613 ATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC 29672 || | || ||||| || || ||||| || || ||| | ||||| | ||| || || Sbjct 198149 GTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTC 198090 Query 29673 CGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAG 29732 || || ||||| ||||||||||| | || || ||| |||| | | ||||| Sbjct 198089 TGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGA 198030 Query 29733 TTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| | ||||| || || || || | ||| || || || || ||||| Sbjct 198029 TTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 >seq3604 Length=163256 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || || ||||| || |||||||| ||||| || || || | Sbjct 65883 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 65942 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || | |||||| || || | ||||||| || || || || || Sbjct 65943 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66002 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | ||| ||| ||| |||| | || ||| ||| |||||| Sbjct 66003 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66062 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | ||| || ||||||||||| | ||||| ||||| || |||||| Sbjct 66063 TTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || || ||||| || |||||||| ||||| || || || | Sbjct 66111 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 66170 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || | |||||| || || | ||||||| || || || || || Sbjct 66171 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66230 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | ||| ||| ||| |||| | || ||| ||| |||||| Sbjct 66231 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66290 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | ||| || ||||||||||| | ||||| ||||| || |||||| Sbjct 66291 TTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | ||| || || || ||||| || |||||||| ||||| || || || | Sbjct 66339 TCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGA 66398 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || | |||||| || || | ||||||| || || || || || Sbjct 66399 TAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66458 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | ||| ||| ||| |||| | || ||| ||| |||||| Sbjct 66459 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66518 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| | ||| || ||||||||||| | ||||| ||||| || ||||| || Sbjct 66519 TTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCATCTT 66569 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || || ||||| || |||||||| ||||| || || || | | || || Sbjct 65667 ACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCC 65726 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || || | ||||||| || || || || || || || || || Sbjct 65727 ATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTT 65786 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| ||| |||| | || ||| ||| ||||||||| | ||| || Sbjct 65787 GTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGAT 65846 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||||| | ||||| ||||| || |||||| Sbjct 65847 GGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 >seq3866 Length=782398 Score = 118 bits (130), Expect = 8e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 ||||| ||||||||||||| | || || ||| || || || ||||| || | ||| Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTC 29717 || | ||| ||||| || || ||||| ||||| ||||| |||||| | ||||||| |||| Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTG-AATTTTAGCTTTGACATTTTC 247868 Query 29718 TACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | |||||||||| || || ||||| || || || || || || | |||||| || || Sbjct 247867 GATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAA 247808 Query 29778 TATCTGCATTTT 29789 || ||||| || Sbjct 247807 AATTTGCATGTT 247796 >seq1800 Length=381758 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| || || || ||||||||||||||||| ||||| | Sbjct 276147 CCACCTCTCAATCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGAC 276088 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || ||||| ||||||||| ||||||| | |||||||||||| ||| Sbjct 276087 AGAGTACGCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGGA 276028 Query 29680 ATACC 29684 ||||| Sbjct 276027 ATACC 276023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385200326666820