Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq35 89.7 7e-13 >seq35 Length=46307 Score = 89.7 bits (98), Expect = 7e-13 Identities = 122/165 (74%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 192952 ATTATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGACGA 193009 |||||||||| ||||| ||||| || ||| ||| | || || | ||| | ||| | Sbjct 17753 ATTATCCACATAAACCTCTTGTAACAACAAGATCTATGGAATACTTACGTT-TCAGAGAA 17811 Query 193010 TTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGA 193069 | ||| |||||||||| ||||||| || || || |||||||||||||||||||| Sbjct 17812 CTG-CCAGCTGGTATTAATTCTATTGTGGCAATTTTATGTTATACTGGTTATAATCAAGA 17870 Query 193070 AGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATT 193114 ||| ||| | || |||||| || || | ||||||||||| || Sbjct 17871 AGATAGTGTAATATTAAATGCTTCTGCTGTAGAAAGAGGATTTTT 17915 Score = 82.4 bits (90), Expect = 1e-10 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 193443 ATACCTGAAATAGGGGATAAATTTTGTTCA-GGAATGGCCCAAAAAGGAACTTGTGGTAT 193501 |||||| |||| || ||||||||| ||| || |||| | |||||||||| ||||| || Sbjct 18280 ATACCTCAAATTGGTGATAAATTTGCTTCCCGGCATGGTC-AAAAAGGAACATGTGGAAT 18338 Query 193502 GATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTAT 193561 || ||| ||||||||||| || || | ||| || ||| ||||||||||| Sbjct 18339 TCAATACAGACAGGAAGATATGCCTTTCACTTGTGAAGGCATCACACCTGATATTATTAT 18398 Query 193562 TAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 ||||| | |||||| ||| | ||||| ||| Sbjct 18399 AAATCCTCACGCTATTCCTTCCCGTATGACAATT 18432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635145682325600