Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq1327 82.4 1e-10 seq35 82.4 1e-10 >seq1327 Length=438370 Score = 82.4 bits (90), Expect = 1e-10 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 22384 CACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCCCT 22443 ||||| || |||||| || || || || |||||| | || ||||| || |||||||| Sbjct 372693 CACGGCGACGGATATCCATTCGACGGGCCGGGTCAAGTGTTGGCTCACGCGTTTTTCCCA 372634 Query 22444 GGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGG 22491 || || ||| |||||||||| ||||||||||| |||||| | ||| Sbjct 372633 GGCACAGGACGAGGAGGAGACGCTCATTTTGACGAGGAAGAAGAATGG 372586 >seq35 Length=46307 Score = 82.4 bits (90), Expect = 1e-10 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 192996 ATACCTGAAATAGGGGATAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTAT 193054 |||||| |||| || ||||||||| ||| || |||| | |||||||||| ||||| || Sbjct 18280 ATACCTCAAATTGGTGATAAATTTGCTTCCCGGCATGGTC-AAAAAGGAACATGTGGAAT 18338 Query 193055 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 193114 || ||| ||||||||||| || || | ||| || ||| ||||||||||| Sbjct 18339 TCAATACAGACAGGAAGATATGCCTTTCACTTGTGAAGGCATCACACCTGATATTATTAT 18398 Query 193115 TAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 ||||| | |||||| ||| | ||||| ||| Sbjct 18399 AAATCCTCACGCTATTCCTTCCCGTATGACAATT 18432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628499616307200