Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3666 179 7e-40 seq3604 179 7e-40 seq3263 132 9e-26 seq3866 105 1e-17 seq3365 98.7 2e-15 seq1800 95.1 2e-14 >seq3666 Length=820529 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||||| ||| ||||| || ||||||||||| || || || || || | Sbjct 197520 TACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGG 197461 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| ||||| ||||| |||||||| | | |||||| ||||| | Sbjct 197460 AAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTG 197401 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| || || ||||||||||| | |||| | ||||| Sbjct 197400 GGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTA 197341 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| ||||| ||||| ||||| | |||||||| || || ||||| Sbjct 197340 CTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||||| ||| ||||| || ||||||||||| || || || || || | Sbjct 197748 TACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGG 197689 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| ||||| ||||| |||||||| | | |||||| ||||| | Sbjct 197688 AAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTG 197629 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| || || ||||||||||| | |||| | ||||| Sbjct 197628 GGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTA 197569 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| ||||| ||||| ||||| | |||||||| || || ||||| Sbjct 197568 CTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||||| ||| ||||| || ||||||||||| || || || || || | Sbjct 197976 TACCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGG 197917 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| ||||| ||||| |||||||| | | |||||| ||||| | Sbjct 197916 AAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTG 197857 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| ||||| || || ||||||||||| | |||| | ||||| Sbjct 197856 GGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTA 197797 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| ||||| ||||| ||||| | |||||||| || || ||||| Sbjct 197796 CTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| | ||||| || ||||| ||||||||||| ||||| || || || || || Sbjct 198202 CCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAA 198143 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| ||||| ||||| |||||||| | | |||||| ||||| || Sbjct 198142 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 198083 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| ||||| || || ||||||||||| | |||| | ||||||| Sbjct 198082 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 198023 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| ||||| ||||| | |||||||| || || ||||| Sbjct 198022 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | ||||| || ||||| || ||||||||||| || || || || || | Sbjct 197292 TACCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGG 197233 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| ||||| ||||| |||||||| | | ||||||||||| | Sbjct 197232 AAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTG 197173 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| || || ||||| ||||||||||| | |||| | || | Sbjct 197172 GGATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAA 197113 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || ||||| || || ||||| |||||||| Sbjct 197112 CTTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 197064 >seq3604 Length=163256 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || |||||||| || |||||||||||||| ||||| || |||||| Sbjct 66340 CCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGAT 66399 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | ||||||||| || ||||| | || ||||| ||||| || Sbjct 66400 AATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 66459 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| || || ||||| ||||||||||| | || || ||||||| Sbjct 66460 ATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACT 66519 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || || ||||| |||| || || ||||| || ||||| Sbjct 66520 TCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCAT 66566 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || |||||||| || |||||||||||||| ||||| || |||||| Sbjct 65884 CCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGAT 65943 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | ||||||||| || ||||| | || ||||| ||||| || Sbjct 65944 AATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 66003 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| || || ||||| ||||||||||| | || || ||||||| Sbjct 66004 ATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACT 66063 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || || ||||| || | || || ||||| || |||||| Sbjct 66064 TCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || |||||||| || |||||||||||||| ||||| || |||||| Sbjct 66112 CCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGAT 66171 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | ||||||||| || ||||| | || ||||| ||||| || Sbjct 66172 AATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGG 66231 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| || || ||||| ||||||||||| | || || ||||||| Sbjct 66232 ATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACT 66291 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || || ||||| || | || || ||||| || |||||| Sbjct 66292 TCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 176 bits (194), Expect = 9e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||||||| || |||||||||||||| ||||| || ||||||| | | || Sbjct 65667 ACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCC 65726 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||||||||| || ||||| | || ||||| ||||| || ||||||||||| Sbjct 65727 ATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTT 65786 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || || ||||| ||||||||||| | || || ||||||||||||||| || Sbjct 65787 GTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGAT 65846 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || | || || ||||| || |||||| Sbjct 65847 GGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 >seq3263 Length=267844 Score = 132 bits (146), Expect = 9e-26 Identities = 209/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 198327 ACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCAT 198386 |||||||| ||| |||||| | | ||||||||| || ||| ||||| || ||||| Sbjct 108147 ACACATGATGATCTGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCAC 108206 Query 198387 AGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGA-AGA 198445 |||| | | ||||||||||||||||||||||| |||||||| || || || ||| Sbjct 108207 GGTTTCCTTCGCATGTACTGGGCTAAAAAGATACTGGAATGGACTGATACTCCAGATAGA 108266 Query 198446 CGCTTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAA 198505 || || || || ||||| || | ||||| | ||||| || || | Sbjct 108267 -GCACTGGCCGATGCCATTTATCTCAATGACAAGTATAGCATGGACGGTCGCGACCCAAG 108325 Query 198506 CGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAG 198565 || | || || ||||||||||| || || || | ||||||| | ||||| |||||| Sbjct 108326 TGGTTTTGTTGGATGTATGTGGTCAATATGTGGTATTCATGATCAGGGGTGGAGAGAAAG 108385 Query 198566 ACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGA 198622 | || ||||| || || || |||||||| ||||| || | |||| ||| ||||| Sbjct 108386 AGAAATTTTTGGAAAAATTAGGTATATGAACTATGAAGGATGCAAGAGAAAGTTTGA 108442 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 197731 TTATACAAGTAGACGCTCATAATATAGTACCTTGTTGGGAAGCTTCTTACAAAGAAGAAT 197790 ||||||| ||||| || |||||||| ||||||||||||| ||| ||| ||||| |||||| Sbjct 107272 TTATACAGGTAGATGCCCATAATATTGTACCTTGTTGGGTAGCCTCTGACAAACAAGAAT 107331 Query 197791 ACGGTGCAAGAACTTTAAGAAAAAAGATATTTGATAAATTATATGAATATATGACAGAAT 197850 | ||||||||| || |||| || || | | |||||| || | | | ||||||| Sbjct 107332 ATTCTGCAAGAACAATACGAAACAAAATCAATAACAAATTACCCGAGTTTTTAACAGAAT 107391 Query 197851 TTCC 197854 | || Sbjct 107392 TCCC 107395 >seq3866 Length=782398 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || |||||||| || | | | | || ||||| || || || || || ||||| Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | | ||||||||| || || || ||||| ||||||||||| || ||||| |||||||| Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCG 247867 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || ||| || || || || | || || ||||| ||||| | || || || || Sbjct 247866 ATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 247807 Query 82803 ATCTGCAT 82810 || ||||| Sbjct 247806 ATTTGCAT 247799 >seq3365 Length=261510 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || || || |||||||| ||||| || || ||||||||||| |||||||| Sbjct 113885 ACCACCTCTTAAGCGAAGTACTAAGTGAAGAGTTGACTCCTTCTGTATATTGTAATCAGA 113826 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| ||||| | ||| || |||||||| || || | |||||||| || || Sbjct 113825 TAATGTGCGACCATCTTCCAATTGCTTGCCAGCAAAAATAAGACGCTGTTGATCCGGGGG 113766 Query 82703 TATTCCT 82709 || ||| Sbjct 113765 AATGCCT 113759 >seq1800 Length=381758 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | ||||| ||||| || ||||||||||| || || || ||||| || Sbjct 276148 ACCACCTCTCAATCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGA 276089 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || ||||| ||||| || |||||||| || | | ||| ||||| ||||| Sbjct 276088 CAGAGTACGCCCATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGG 276029 Query 82703 TATTCCT 82709 || ||| Sbjct 276028 AATACCT 276022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981776629762780