Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3604 114 3e-20 seq3666 113 1e-19 seq3866 102 2e-16 >seq3604 Length=163256 Score = 114 bits (126), Expect = 3e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||||||||||| ||| ||| ||| | | ||| Sbjct 65867 AAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCGGACTCTATTGAAAAT 65808 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| || |||||||| || ||| || || | ||||| Sbjct 65807 GTGAAAGCTAAA-ATCCAAGACAAGGAAGGAATCCCACCAGACCAACAGCGATTGATCTT 65749 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || ||||||||||| | || || | || ||||| | |||||||| || Sbjct 65748 CGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAATATTCAGAAAGAATC 65689 Query 206364 TACTCTTCAC 206373 ||| |||||| Sbjct 65688 TACACTTCAC 65679 Score = 114 bits (126), Expect = 3e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||||||||||| ||| ||| ||| | | ||| Sbjct 66095 AAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCGGACTCTATTGAAAAT 66036 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| || |||||||| || ||| || || | ||||| Sbjct 66035 GTGAAAGCTAAA-ATCCAAGACAAGGAAGGAATCCCACCAGACCAACAGCGATTGATCTT 65977 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || ||||||||||| | || || | || ||||| | |||||||| || Sbjct 65976 CGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAATATTCAGAAAGAATC 65917 Query 206364 TACTCTTCAC 206373 ||| |||||| Sbjct 65916 TACACTTCAC 65907 Score = 114 bits (126), Expect = 3e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||||||||||| ||| ||| ||| | | ||| Sbjct 66323 AAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCGGACTCTATTGAAAAT 66264 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| || |||||||| || ||| || || | ||||| Sbjct 66263 GTGAAAGCTAAA-ATCCAAGACAAGGAAGGAATCCCACCAGACCAACAGCGATTGATCTT 66205 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || ||||||||||| | || || | || ||||| | |||||||| || Sbjct 66204 CGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAATATTCAGAAAGAATC 66145 Query 206364 TACTCTTCAC 206373 ||| |||||| Sbjct 66144 TACACTTCAC 66135 Score = 114 bits (126), Expect = 3e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| |||||||||||||| ||| ||| ||| | | ||| Sbjct 66551 AAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCGGACTCTATTGAAAAT 66492 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| || |||||||| || ||| || || | ||||| Sbjct 66491 GTGAAAGCTAAA-ATCCAAGACAAGGAAGGAATCCCACCAGACCAACAGCGATTGATCTT 66433 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| || ||||||||||| | || || | || ||||| | |||||||| || Sbjct 66432 CGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAATATTCAGAAAGAATC 66373 Query 206364 TACTCTTCAC 206373 ||| |||||| Sbjct 66372 TACACTTCAC 66363 >seq3666 Length=820529 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || || |||||||| ||| ||||| | | ||| Sbjct 197991 AAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCTGATTCCATTGAAAAT 198050 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| ||| | | ||||| Sbjct 198051 GTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTT 198110 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| ||| | || | |||| |||||| ||||||| || ||| Sbjct 198111 GCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATCCAGAAGGAATCT 198170 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| | || ||| | || ||| Sbjct 198171 ACTCTTCACTTGGTGTTGCGTCTCCGA 198197 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || || |||||||| ||| ||||| | | ||| Sbjct 197307 AAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCTGATTCCATTGAAAAT 197366 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| ||| | | ||||| Sbjct 197367 GTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTT 197426 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| ||| | || | |||| |||||| | || ||||| ||| Sbjct 197427 GCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATTCAAAAAGAATCT 197486 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | |||||| | || ||| Sbjct 197487 ACCCTTCACTTGGTTTTGCGTCTCCGA 197513 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || || |||||||| ||| ||||| | | ||| Sbjct 197535 AAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCTGATTCCATTGAAAAT 197594 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| ||| | | ||||| Sbjct 197595 GTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTT 197654 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| ||| | || | |||| |||||| | || ||||| ||| Sbjct 197655 GCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATTCAAAAAGAATCT 197714 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | |||||| | || ||| Sbjct 197715 ACCCTTCACTTGGTTTTGCGTCTCCGA 197741 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||||||||| || || || |||||||| ||| ||||| | | ||| Sbjct 197763 AAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCTGATTCCATTGAAAAT 197822 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| || || ||| ||| | | ||||| Sbjct 197823 GTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTT 197882 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | ||||| ||| | || | |||| |||||| | || ||||| ||| Sbjct 197883 GCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATTCAAAAAGAATCT 197942 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | |||||| | || ||| Sbjct 197943 ACCCTTCACTTGGTTTTGCGTCTCCGA 197969 Score = 95.1 bits (104), Expect = 3e-14 Identities = 158/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || ||||| |||||||||||||| || ||||| Sbjct 197067 CAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCTGAT 197126 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | ||| || ||||| ||| || ||||| || ||||| || || || ||| Sbjct 197127 TCCATTGAAAATGTTAAAGCTAAA-ATCCAAGACAAGGAAGGTATCCCACCAGA---TCA 197182 Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 | || || ||||| ||||||||||| | ||||| ||| | || | |||| ||||| Sbjct 197183 ACAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAA 197242 Query 206349 CGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | | || ||||| ||||| |||||| | || ||| | || ||| Sbjct 197243 CATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGA 197285 >seq3866 Length=782398 Score = 102 bits (112), Expect = 2e-16 Identities = 139/189 (74%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || || ||||||||| ||||| Sbjct 247814 AAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTCTGACACTATCGAAAAT 247873 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || || ||| | | ||||| Sbjct 247874 GTCAAAGCTAAA-ATTCAAGATAAAGAAGGTATCCCACCCGATCAACAACGTTTGATCTT 247932 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | ||||||||| | |||||| | ||||| ||| |||| |||| || Sbjct 247933 CGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTATAACATCCA-AAAGGGTA 247991 Query 206364 TACTCTTCA 206372 | || |||| Sbjct 247992 TGCT-TTCA 247999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181759928842420