Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3263 122 8e-23 seq3666 107 2e-18 seq3604 82.4 7e-11 >seq3263 Length=267844 Score = 122 bits (134), Expect = 8e-23 Identities = 211/304 (69%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 44117 CACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCA 44176 ||| |||||| | ||||||| |||| |||| ||| || | ||||| || ||||| Sbjct 108146 CACACATGATGATCTGTGGAATTCTGCACAAATACAGTTGGTAAAGGAAGGCAAGATGCA 108205 Query 44177 CCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAAC 44236 | | | | || ||||| ||| || |||||| |||| ||| | || | | | | Sbjct 108206 CGGTTTCCTTCGCATGTACTGGGCTAAAAAGATACTGGAATGGACTGATACTCCAGATAG 108265 Query 44237 CGCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAA 44296 || || | ||||||| ||||| || |||||||| || |||||||||||||||| | Sbjct 108266 AGCACTGGCCGATGCCATTTATCTCAATGACAAGTATAGCATGGACGGTCGCGACCCAAG 108325 Query 44297 CGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGC 44355 || | || |||||||||||||| || || ||| | || || ||||| |||| |||| Sbjct 108326 TGGTTTTGTTGGATGTATGTGGTCAATATGTGGTATTCATGATCAGGG-GTGGAGAGAAA 108384 Query 44356 TACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATG 44415 | || | || ||| | | || |||||||| | || ||| ||||||||||| Sbjct 108385 GAGAAATTTTTGGAAAAATTAGGTATATGAACTATGAAGGATGCAAGAGAAAGTTTGACA 108444 Query 44416 TAAA 44419 |||| Sbjct 108445 TAAA 108448 >seq3666 Length=820529 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||||||||| || | ||| || |||||||||||||| |||| Sbjct 197290 CCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197231 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || ||||| || ||||| ||||| ||||| || || | || Sbjct 197230 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 197171 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| ||| ||| || || | | || | | | || || || || Sbjct 197170 ATACCTTCCTTGTCTTGGAT-TTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAAC 197112 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| |||||||| ||||||||||| ||||| |||||||| Sbjct 197111 TTCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 197064 >seq3604 Length=163256 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | || || || | ||| || || ||||| ||||| || | Sbjct 65654 TTCCACCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG 65713 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || | || |||| || || || || || ||||| ||||| ||||| | | Sbjct 65714 ATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTG 65773 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | |||||||| ||| ||| |||| || | || | | | ||| ||||| Sbjct 65774 GGATTCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCT 65832 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||| ||||| || || | |||||||||||| || ||||||| Sbjct 65833 ACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATTC 65884 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || ||||| ||||| || | || || || | || |||| || || || || || Sbjct 65920 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 65979 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGT 35664 ||||| ||||| ||||| | || | | |||||||| ||| ||| |||| || | | Sbjct 65980 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATT 66038 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | | ||| ||||| || |||| ||||| ||||| || || | ||||||||| Sbjct 66039 TTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCAC 66098 Query 35725 AAATATCTGCATTC 35738 ||| || ||||||| Sbjct 66099 AAAAATTTGCATTC 66112 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || ||||| ||||| || | || || || | || |||| || || || || || Sbjct 66148 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66207 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGT 35664 ||||| ||||| ||||| | || | | |||||||| ||| ||| |||| || | | Sbjct 66208 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATT 66266 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | | ||| ||||| || |||| ||||| ||||| || || | ||||||||| Sbjct 66267 TTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCAC 66326 Query 35725 AAATATCTGCATTC 35738 ||| || ||||||| Sbjct 66327 AAAAATTTGCATTC 66340 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || ||||| ||||| || | || || || | || |||| || || || || || Sbjct 66376 TCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAG 66435 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT-CAGAGT 35664 ||||| ||||| ||||| | || | | |||||||| ||| ||| |||| || | | Sbjct 66436 ATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGAT-TTTAGCTTTCACATT 66494 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | | ||| ||||| || |||| ||||| ||||| || |||| ||||||||| Sbjct 66495 TTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCAC 66554 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 66555 AAAGATTTGCAT 66566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450770947621600