Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3666 141 9e-29 seq3866 116 4e-21 seq3604 100 3e-16 seq48 84.2 2e-11 >seq3666 Length=820529 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| |||||||| | ||| || || ||||| |||||||||||||||||| | Sbjct 197290 CCACCTCGGAGACGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197231 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || || || || ||||| ||||||||||| ||||| || || Sbjct 197230 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 197171 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| ||||| ||| || || | | || || || || || Sbjct 197170 ATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACT 197111 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | ||| || |||||||| || |||||||| || || || ||||| ||| Sbjct 197110 TCCAAAGTGATAGTTTTACCAGTCAAAGTTTTGACAAAGATCTGCATGTTG 197060 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| |||| ||| |||||||| | ||| || || |||||||| || |||||||||||| Sbjct 198203 TCCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGA 198144 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | ||| || || || || || ||||| |||||||| || || || || || Sbjct 198143 AAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGG 198084 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || || || || | | || || ||||| || Sbjct 198083 GATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTAC 198024 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || | || || ||||| |||||||| Sbjct 198023 TTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| ||||| || | ||| || || ||||| |||||||||||||||||| | Sbjct 197518 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197459 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || || || || ||||| |||||||| || || || || || Sbjct 197458 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197399 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || || || || || | | || || ||||| || Sbjct 197398 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197339 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || | || || ||||| |||||||| Sbjct 197338 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197292 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| ||||| || | ||| || || ||||| |||||||||||||||||| | Sbjct 197746 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197687 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || || || || ||||| |||||||| || || || || || Sbjct 197686 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197627 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || || || || || | | || || ||||| || Sbjct 197626 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197567 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || | || || ||||| |||||||| Sbjct 197566 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197520 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| ||||| || | ||| || || ||||| |||||||||||||||||| | Sbjct 197974 CCACCTCGGAGACGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAA 197915 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || || || || ||||| |||||||| || || || || || Sbjct 197914 AGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGG 197855 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||| || || || || || | | || || ||||| || Sbjct 197854 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACT 197795 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || | || || ||||| |||||||| Sbjct 197794 TCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCAT 197748 >seq3866 Length=782398 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| || || |||||||| || |||||||| || || |||||||| Sbjct 247953 TCTTCAAGCTGCTTGCCGGCGAAGATCAAACGTTGTTGATCGGGTGGGATACCTTCTTTA 247894 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 ||||||||||| |||||| || | ||||| || || || || || || || ||| Sbjct 247893 TCTTGAATTTTAGCTTTGACATTTTCGATAGTGTCAGAAGACTCGACCTCAAGGGTGATG 247834 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || | ||||| |||||||||||||| ||| Sbjct 247833 GTCTTCCCTGTAAGGGTTTTCACGAAAATTTGCATGTTG 247795 >seq3604 Length=163256 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | || | ||| || || ||||| || ||||| |||||||| Sbjct 65882 TTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG 65941 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || || | ||||| || || || ||||| ||||| || || || | Sbjct 65942 ATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTG 66001 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| ||||| ||| || || | | ||| || ||||| | Sbjct 66002 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66061 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | ||| |||||||| || || | |||||| || |||||||||||| Sbjct 66062 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | || | ||| || || ||||| || ||||| |||||||| Sbjct 66110 TTCCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAG 66169 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || || | ||||| || || || ||||| ||||| || || || | Sbjct 66170 ATAATGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTG 66229 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| ||||| ||| || || | | ||| || ||||| | Sbjct 66230 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTA 66289 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | ||| |||||||| || || | |||||| || |||||||||||| Sbjct 66290 CTTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||| || ||||| |||||||| | || | || || | || Sbjct 65679 GTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTG 65738 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || || ||||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 65739 TTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 65798 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | | ||| || ||||| || || | ||| |||||||| || || Sbjct 65799 AGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGT 65858 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 | |||||| || |||||||||||| Sbjct 65859 AAGAGTTTTCACAAAAATTTGCATT 65883 >seq48 Length=686774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 8247 TCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAA 8306 ||||| ||||| |||||||| || ||||||| ||||| |||||||| || |||||||| Sbjct 303828 TCAAATTGAAACTGGTATGCCATATGTGCTGTATAAAGATGCTTGCAATGCAAAAAGCAA 303769 Query 8307 TCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACA 8365 ||||| || | || || ||| || || ||||| || ||||||| | |||| || Sbjct 303768 TCAAAAAAATCTTGGTACAATTAAGTGTAGTAATCTTTGTACTGAAATAATTCAGTTCA 303710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505373003730400