Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq40 141 1e-28 seq2 107 3e-18 seq624 100 4e-16 seq48 91.5 2e-13 >seq40 Length=47542 Score = 141 bits (156), Expect = 1e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 |||||||| ||||| | |||||||||||||||||| || || || ||| || ||||| Sbjct 39910 TATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAAC 39851 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || ||||||||||| || || || | ||| || ||| | |||||| ||| | | |||| Sbjct 39850 CCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAGATTT 39791 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 ||||| || || ||||| ||| ||||||||||| ||||| || ||||| | | Sbjct 39790 TCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACGT 39731 Query 40067 TCATCGGGTGTCAATTTATTCCAGTCAT 40094 ||||| |||||| ||||||| |||| Sbjct 39730 TCATCATCAGTCAATCTATTCCAATCAT 39703 Score = 134 bits (148), Expect = 2e-26 Identities = 162/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | || || || || | || ||||||| || || || | Sbjct 40233 CCTCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCT 40174 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||||| ||||||||| |||||| || || || ||||| || || ||||||| Sbjct 40173 TCATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATG 40114 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCTGTGCCCAATCAG 39815 |||| | ||| || || || | | | | ||| |||||||||| | |||||||| | Sbjct 40113 CAACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTG 40054 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | || || |||||||| ||||| ||||| ||||||||||| Sbjct 40053 CCTTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAA 40014 >seq2 Length=2033018 Score = 107 bits (118), Expect = 3e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 ||||| ||||| | |||||||||||| || || |||||||| ||||| ||||| ||||| Sbjct 1647035 GTATAGGGTTCTATAGATTCATTATTGCCAAGGATTTGAGCTGTTGAAGCAGTAGGCATT 1646976 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTT- 68879 ||||| | || || |||||| | ||||||| | ||||| ||||||| || ||| Sbjct 1646975 GGTGCTAATAACAATGAATTTCTTACACCATGTTTAGCAATTTTTTCTTTTA-ATATTTC 1646917 Query 68880 CCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||||| ||| | |||| || |||||||| | ||| || |||| ||| Sbjct 1646916 CCAATTCCATAAATCACTGGGCTTCACATTCCACATATCATACTGTAAAAT 1646866 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || ||||| ||||| | |||||||||| | |||||||| || ||| Sbjct 1644879 AAATCGTCGCCCCAGACATCTGAAAGACCAGGACATTTACGAGGACACATTAAGCTCCAA 1644820 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| ||| ||| ||| |||||||| ||| || ||||||||||| | ||| | | Sbjct 1644819 GGTTGATCAGCCTCAACACGTCTCATAAATTCATCAGGTATCCAAAGAGCCAAAAATAAA 1644760 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTATTTTT 69674 ||||| ||| | | ||||| ||| || |||||||| Sbjct 1644759 TCTCTAGTTTTTTCTTCTTTATTGCCAGTATTTTT 1644725 >seq624 Length=551017 Score = 100 bits (110), Expect = 4e-16 Identities = 85/102 (83%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 163289 AATTAAAGATGATTAAAATTAGTAAGGATCCaaaaaaaGTACCAGAGTGGTTGGTAGTTA 163348 ||||||| ||||| ||||||||||| |||||| ||||||| ||||| |||||| | | Sbjct 172534 AATTAAAAATGATCAAAATTAGTAAAGATCCAGAAAAAGTTCCAGAATGGTTGAAATGCA 172593 Query 163349 ATAAAATCTAT-ATTCCAGATTTTGTAGCAGAGGATCCAAAA 163389 ||||| |||| ||||| |||||||||||||| ||||| ||| Sbjct 172594 CTAAAA-CTATGATTCCTGATTTTGTAGCAGAAGATCCTAAA 172634 >seq48 Length=686774 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/185 (71%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 ||| | ||| | || |||||||| | ||||||||||||||| |||||||| || ||||| Sbjct 302941 GTATAAATTTGTTGTGTATGGTTCTATAGATTCATTATTTCCAAGAATTTGTGCTGTTGA 303000 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 || || ||||| ||||| | || || |||||||| |||||| ||||| | Sbjct 303001 AGCCGTAGGCATCGGTGCTAATAACAATGAATTTCTAACTCCATGTTGAGCAATTTTCGC 303060 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927 ||||| | | ||| ||||| || || | || |||||||| | ||| || || | Sbjct 303061 TTTTAATTTATCCCAGTCCCATAGGTCGGTAGGCTTTACATTCCACAAATCATACTGCA- 303119 Query 68928 AATTC 68932 ||||| Sbjct 303120 AATTC 303124 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 |||||| | ||| | | ||||| ||| | | |||||||| |||||||| || ||||| Sbjct 303203 TGATCCTTGATAGGATGAATAAGTTCCATATTTTTCAGCTAACTCACAACTAGCTTCTAA 303262 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065 |||||| ||||| | || || || || | ||| || | | ||| ||| || | Sbjct 303263 TGCACCATAATACAAAGTCTCAAATATTTGTAAATTTAGCTTTCGTGATTCGGGAGAGCC 303322 Query 69066 GAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 || ||| | | | | | |||| ||||||||| || || || ||||| || | ||| Sbjct 303323 AAACGGAAATCGCATCAATAAAAATAAATCTGCCAAACCTTGTACACCAATCCCAACAGG 303382 Query 69126 TCTATGTCTCTTATTTGAACTTTCAGC 69152 | ||||| ||||||||| ||||||| Sbjct 303383 ACGATGTCGTTTATTTGAAGTTTCAGC 303409 Score = 86.0 bits (94), Expect = 9e-12 Identities = 124/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAAC--TTGGATCGGCTATATGAAT 68498 |||| || |||||||| | | || || ||| | |||| |||| | | || ||||| Sbjct 302499 TCCAACCATAGAAATGTACAGATGATATTTT--ACTAACAGTTGGTTGCTCAATGTGAAT 302556 Query 68499 ATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACT 68558 ||| | || ||| |||||| ||||| || ||| |||||| ||||| | || ||| | Sbjct 302557 ATTTAATGACTGAGATTGATCAATGAATGCCGCTCGATCTGCAGCCATATCTAATATAAT 302616 Query 68559 CTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 ||||||| | ||||||| | || ||| | | | ||| ||||||||||||| Sbjct 302617 TTTTTGAGATAGTTCCCAATTTGTTTTATACAATTCTTTTATATCATCTGGAA 302669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686874282832800