Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1102 125 6e-24 seq40 120 2e-22 seq2053 98.7 8e-16 >seq1102 Length=1235416 Score = 125 bits (138), Expect = 6e-24 Identities = 236/343 (69%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 |||||| | || || |||||||||||||| | ||| |||| ||| || |||||| Sbjct 520671 AGGTGACTTGGGCCCAGTTTATGGATTTCAATGGCGTCATTATGGTGCTGAATATGTAGA 520612 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 | || | | ||||| | ||||| || ||||| | || ||| || |||| || Sbjct 520611 TGTGCATACAGATTACTCAGGAAAAGGTATTGATCAGCTTCAAAACGTCATCAATACAAT 520552 Query 40985 TAAATCCGATCC---CGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGT 41041 |||| | | || |||||| ||| || | || || ||||| ||| || || Sbjct 520551 TAAAACTAACCCTGACGATAGGCGA---ATGCTTATGATTGCATGGAATCCATGCGATGT 520495 Query 41042 ACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTG 41100 || | ||||| || ||||| ||||| ||||| || ||||||| || |||| Sbjct 520494 ACCTAAAATGGCCTTACCACCATGTCA-TTGTTTGGTACAGTTTTTTGTCGCTGATGGAT 520436 Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160 | ||||| |||||| |||| ||| |||||| ||||||||| ||||| || || ||||| | Sbjct 520435 ATCTGTCGTGTCAAATGTACCAACGATCAGCTGACATGGGTCTAGGAGTACCCTTTAATA 520376 Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | || |||||| | | || || || ||||| || || || || Sbjct 520375 TTGCCAGTTATTCATTACTTACATACATGATAGCCCATGTCAC 520333 >seq40 Length=47542 Score = 120 bits (132), Expect = 2e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 || |||||||| || || || ||||||||||| || || || |||||||||||| Sbjct 39735 CACTTTATATCCCACGTATTAGCATTTTTTGCTGCTTCAGATGGTATTGTCAATGAAAAT 39794 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 | ||| || ||| | |||||||||||| | | || || ||||||||||||||||| Sbjct 39795 CTTGTTGAACGATTTTCTCAAGAAGTTCAAGTGACGGAGGCTAGATGTTTTTATGGGTTT 39854 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||||| || || ||||| ||||| |||||||| ||| | | || ||||| ||||| Sbjct 39855 CAAATAATGATGGAGAATATACATTCAGAAATGTATAGTTTATTAATTGATACATACAT 39913 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/207 (71%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAG-CAGACTGGGCCCTTAA 44097 || |||||||| || ||||| | || | | |||| | |||| |||| ||||| || || Sbjct 40011 TTATTTAATGCTATTGAAACCATGCC-GTGTGTAAAAAAAAAGGCAGATTGGGCTCTGAA 40069 Query 44098 ATGGATAA---ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 ||||||| || || | ||||||| ||| || | || || ||||| | || || Sbjct 40070 GTGGATAAGCGATAGTAAAGCGACTTTTGGTGAAAGATTAGTTGCATTTGCTGCCGTTGA 40129 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| || || || || ||| ||||| || |||||||| | ||||||||||| || || Sbjct 40130 AGGTATATTTTTCTCTGGAAGTTTTGCTGCATTATTTTGGATGAAGAAACGAGGATTAAT 40189 Query 44215 GCCTGGGTTGACGTTTTCA--AATGAG 44239 ||| || || || ||||| |||||| Sbjct 40190 GCCAGGTTTAAC--TTTCAGCAATGAG 40214 >seq2053 Length=1098109 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 ||||| || || || | |||||| | || || || ||||| ||||||||||| || | Sbjct 895005 TTGCATATAATCATCTTTGATGAAATTGATGCTATTTGTAAAGCAAGAGGTTCTGTTGGA 894946 Query 19609 ---AAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| ||||| || |||||||| || ||||| | | | ||| | || || ||| Sbjct 894945 GGAAATACAGGAGTGCACGACACTGTGGTTAATCAGTTGTTAGCTAAAATTGATGGAGTT 894886 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||||| ||||| || ||||||||||| |||||||||||| || | || ||| Sbjct 894885 GAGCAACTAAATAACATCTTAGTTATTGGTATGACTAATAGAAGAGACATGATTGACGAA 894826 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAA 19753 || ||| || |||| || || | ||| ||| Sbjct 894825 GCGTTACTAAGACCTGGCCGACTTGAAGTAA 894795 Score = 98.7 bits (108), Expect = 8e-16 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 19352 TTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAAT 19411 ||||||| | ||| ||||| || ||| ||||||||||| || ||| || || | || Sbjct 895260 TTTTGCTATTTGGTCCACCTGGAACTGGTAAAACATTAATGGCTAGACAAATTGGACAAA 895201 Query 19412 TACTTACAAAAC---AACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATG 19468 | | | || ||||| |||||||| ||||| ||| |||| || | ||||||| Sbjct 895200 TGTTGAATGCACGTGAACCT---AAAATTGTTAATGGCCCTCAAATTTTGGACAAATATG 895144 Query 19469 TAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 | ||| |||| |||| |||| || || | || || || || |||||||||||| ||||| Sbjct 895143 TTGGTGAATCTGAAGCAAATATAAGAAGATTATTCGCAGATGCTGAAGAAGAAGAAAAA 895085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397436527140100