Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3604 120 3e-22 seq3666 113 4e-20 >seq3604 Length=163256 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||| || || | ||||| ||||| |||||||||||||| | | Sbjct 66340 CCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGAT 66399 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| || | ||||| | ||||| |||||| | || | |||||||| || || || Sbjct 66400 AATGTACGGC-CATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66458 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||| || ||||| |||| | || ||| | | ||| || Sbjct 66459 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66518 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | |||||| |||||||||||||||||||||||||| Sbjct 66519 TTCCAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCAT 66566 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||| || || | ||||| ||||| |||||||||||||| | | Sbjct 65884 CCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGAT 65943 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| || | ||||| | ||||| |||||| | || | |||||||| || || || Sbjct 65944 AATGTACGGC-CATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66002 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||| || ||||| |||| | || ||| | | ||| || Sbjct 66003 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66062 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | |||||| || |||||||||||||| |||||||| Sbjct 66063 TTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCAT 66110 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||| || || | ||||| ||||| |||||||||||||| | | Sbjct 66112 CCTCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGAT 66171 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| || | ||||| | ||||| |||||| | || | |||||||| || || || Sbjct 66172 AATGTACGGC-CATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGG 66230 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || ||| || ||||| |||| | || ||| | | ||| || Sbjct 66231 GATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTAC 66290 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | |||||| || |||||||||||||| |||||||| Sbjct 66291 TTCCAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCAT 66338 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 ||| || || | ||||| ||||| |||||||||||||| | | |||| || | |||| Sbjct 65673 TACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGC-CATCTT 65731 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| |||||| | || | |||||||| || || || | || || || || Sbjct 65732 CCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTT 65791 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || ||||| |||| | || ||| | | ||| ||||| | ||| || | || Sbjct 65792 GGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTT 65851 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || |||||||||||||| |||||||| Sbjct 65852 TGCCAGTAAGAGTTTTCACAAAAATTTGCAT 65882 >seq3666 Length=820529 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| ||||||||||| ||||||||| | |||| || Sbjct 197278 CGCAACACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCG 197219 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || ||||| | || | |||||||||||| || || | ||| || || Sbjct 197218 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTG 197159 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || ||| | |||| | | || | | |||||||| | ||| ||| Sbjct 197158 TCTTGGATTTTAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATA 197099 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| |||||| |||||||| ||||| Sbjct 197098 GTTTTACCAGTCAAAGTTTTGACAAAGATCTGCAT 197064 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| ||||||||||| ||||||||| | |||| || Sbjct 197506 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCG 197447 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || ||||| | || | ||| ||||| || || || | ||| ||||| Sbjct 197446 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 197387 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | |||| | | || | | ||| ||||| | ||||| Sbjct 197386 TCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATG 197327 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || || |||||||||||| Sbjct 197326 GTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 197291 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| ||||||||||| ||||||||| | |||| || Sbjct 197734 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCG 197675 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || ||||| | || | ||| ||||| || || || | ||| ||||| Sbjct 197674 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 197615 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | |||| | | || | | ||| ||||| | ||||| Sbjct 197614 TCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATG 197555 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || || |||||||||||| Sbjct 197554 GTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 197519 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | ||||| ||||||||||| ||||||||| | |||| || Sbjct 197962 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCG 197903 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || ||||| | || | ||| ||||| || || || | ||| ||||| Sbjct 197902 TCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTG 197843 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | |||| | | || | | ||| ||||| | ||||| Sbjct 197842 TCTTGGATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATG 197783 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || || || || || |||||||||||| Sbjct 197782 GTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 197747 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/240 (68%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 27013 AATTATTG----CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATA 27068 |||||||| || || || | ||||| ||||| || | ||||| || || || || Sbjct 198214 AATTATTGTGCTCCACCTCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTCTGGATG 198155 Query 27069 TTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128 ||||||||| | |||| ||||||| || || || ||||| | || | ||| ||| Sbjct 198154 TTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAAACGTTGT 198095 Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188 || || || || | ||| ||||| || ||||||| || | |||| | | || Sbjct 198094 TGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTAACATTTTCAATGGAATCA 198035 Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | ||| ||||| | ||||| | || || || || || || || |||||||||||| Sbjct 198034 GATGATTCTACTTCCAATGTTATGGTCTTTCCTGTGAGGGTCTTTACGAAGATTTGCATA 197975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424913580870240