Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3666 158 1e-33 seq3604 136 5e-27 seq2154 129 7e-25 seq3866 109 6e-19 >seq3666 Length=820529 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || | || || || ||||| ||| | || ||||||||| | Sbjct 197064 ATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCT 197123 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||||| |||| | || |||||||| || |||||||| || || || ||||| || Sbjct 197124 GATTCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCAGATCAA 197183 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || |||||||| || || | || || || | ||||| || Sbjct 197184 CAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197243 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || ||||| | || |||||||| || ||||| Sbjct 197244 ATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGAGGTGG 197290 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || || | || || || ||| | Sbjct 197976 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 198035 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||||| |||| | ||||| || || || ||||| || || || || |||||||| Sbjct 198036 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 198095 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| || |||||||| || || | || || || | ||||| || Sbjct 198096 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 198155 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| |||||||| |||||||| | || |||||||| || |||||| Sbjct 198156 ATCCAGAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGAGGTGGA 198203 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || || | || || || ||| | Sbjct 197292 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197351 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||||| |||| | ||||| || || || ||||| || || || || |||||||| Sbjct 197352 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197411 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| || |||||||| || || | || || || | ||||| || Sbjct 197412 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197471 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || ||||| | || |||||||| || ||||| Sbjct 197472 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGG 197518 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || || | || || || ||| | Sbjct 197520 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197579 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||||| |||| | ||||| || || || ||||| || || || || |||||||| Sbjct 197580 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197639 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| || |||||||| || || | || || || | ||||| || Sbjct 197640 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197699 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || ||||| | || |||||||| || ||||| Sbjct 197700 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGG 197746 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || || | || || || ||| | Sbjct 197748 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197807 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| ||||| |||| | ||||| || || || ||||| || || || || |||||||| Sbjct 197808 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197867 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || ||||| || |||||||| || || | || || || | ||||| || Sbjct 197868 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197927 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || ||||| | || |||||||| || ||||| Sbjct 197928 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGG 197974 >seq3604 Length=163256 Score = 136 bits (150), Expect = 5e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || ||||| || || ||| | || || || || Sbjct 66566 ATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66507 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| |||| |||| |||||||| || |||||||| ||||| || |||||||| Sbjct 66506 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 66447 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || || ||| | || |||| ||||| || | ||||| ||| Sbjct 66446 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 66387 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || ||||| || ||||| |||| | |||||||| || ||| Sbjct 66386 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGA 66339 >seq2154 Length=352369 Score = 129 bits (142), Expect = 7e-25 Identities = 165/227 (73%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || ||||| || ||||| | || ||| ||| |||||||| Sbjct 250911 ATGCAAATTTTTGTTAAAACCCTTACGGGTAAGACAAGTATTCTCGAGATTGAGTCATCA 250852 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| |||| |||||| || | ||||| | || || || || ||||| || || || Sbjct 250851 GATTCTATTGAAAATTTAAAATCGAAAATCTAAGATAAAGAAGGCATTCCCCCGGATCAA 250792 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||||||||||| |||||| | || |||| |||||| || | || || ||| Sbjct 250791 CAACCTCTAATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACATTATCTGATTACAAT 250732 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | |||| || |||||||| |||| | ||| | | ||||| Sbjct 250731 AT---ACAGGAGTCAACTCTTCACTTAGTACTTCGTTTAAGAGGTGG 250688 >seq3866 Length=782398 Score = 109 bits (120), Expect = 6e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || ||||| || ||||| || || |||||||| ||||| | Sbjct 247799 ATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTCT 247858 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || ||||||||||| || || || || || || || || || Sbjct 247859 GACACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 247918 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || || ||||| || || |||| ||||| | | || ||||| Sbjct 247919 CAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTATAAC 247978 Query 27586 GTCCAAAAGG 27595 ||||||||| Sbjct 247979 ATCCAAAAGG 247988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570281741902400