Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3666 165 7e-36 seq3604 136 3e-27 seq3263 122 8e-23 seq3866 120 3e-22 seq2154 96.9 3e-15 >seq3666 Length=820529 Score = 165 bits (182), Expect = 7e-36 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| |||||| |||| || || |||| ||| | ||||| || | || Sbjct 197063 CATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATC 197122 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || || ||||| | || ||| ||||| |||||||| ||||| || ||||| ||||| Sbjct 197123 TGATTCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCAGATCA 197182 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | ||||| || ||| | |||||| | || ||||||| ||||| Sbjct 197183 ACAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAA 197242 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| || || ||| | || ||||| |||||| | || ||||| || Sbjct 197243 CATTCAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGAGGTGGTAT 197293 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || || || ||| | || || | ||||| ||| | || Sbjct 197292 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197351 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || || || || |||||||||||||| || ||||| || ||| Sbjct 197352 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197411 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| || ||| | |||||| | || ||||||| |||||| Sbjct 197412 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197471 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | || |||||||||||| | || ||||| || Sbjct 197472 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGTAT 197521 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || || || ||| | || || | ||||| ||| | || Sbjct 197520 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197579 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || || || || |||||||||||||| || ||||| || ||| Sbjct 197580 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197639 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| || ||| | |||||| | || ||||||| |||||| Sbjct 197640 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197699 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | || |||||||||||| | || ||||| || Sbjct 197700 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGTAT 197749 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || || || ||| | || || | ||||| ||| | || Sbjct 197748 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197807 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || || || || |||||||||||||| || ||||| || ||| Sbjct 197808 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 197867 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| || ||| | |||||| | || ||||||| |||||| Sbjct 197868 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 197927 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | || |||||||||||| | || ||||| || Sbjct 197928 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGAGGTGGTAT 197977 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || || || ||| | || || | ||||| ||| | || Sbjct 197976 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 198035 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || || || || |||||||||||||| || ||||| || ||| Sbjct 198036 GATTCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAA 198095 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||| || ||| | |||||| | || ||||||| |||||| Sbjct 198096 CAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAAC 198155 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | || ||||| |||||| | || ||||| Sbjct 198156 ATCCAGAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGAGGTGG 198202 >seq3604 Length=163256 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || ||||| | || ||| | ||||| ||| | || Sbjct 65882 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 65823 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 65822 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 65763 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| |||||||||||||| | || | || || ||||| Sbjct 65762 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 65703 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || | || || || | ||| | || ||||| || Sbjct 65702 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGTGGAAT 65653 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||||||||| ||||| | || ||| | ||||| ||| | || Sbjct 66566 ATGCAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66507 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 66506 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 66447 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| |||||||||||||| | || | || || ||||| Sbjct 66446 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 66387 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || | || || || | ||| | || || || || Sbjct 66386 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAAT 66337 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || ||||| | || ||| | ||||| ||| | || Sbjct 66110 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66051 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 66050 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 65991 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| |||||||||||||| | || | || || ||||| Sbjct 65990 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 65931 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || | || || || | ||| | || || || || Sbjct 65930 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAAT 65881 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || ||||| | || ||| | ||||| ||| | || Sbjct 66338 ATGCAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCG 66279 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || ||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 66278 GACTCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAA 66219 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| |||||||||||||| | || | || || ||||| Sbjct 66218 CAGCGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAAT 66159 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || | || || || | ||| | || || || || Sbjct 66158 ATTCAGAAAGAATCTACACTTCACTTAGTACTCCGTCTTCGTGGAGGAAT 66109 >seq3263 Length=267844 Score = 122 bits (134), Expect = 8e-23 Identities = 184/259 (71%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 |||||||| |||||||| || | |||||||| ||||| ||||||||| |||||||| || Sbjct 108192 GAAGGCAAGATGCACGGTTTCCTTCGCATGTACTGGGCTAAAAAGATACTGGAATGGACT 108251 Query 135566 GCATCGCCTGC-AGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGA 135624 | | || | |||| | || | || || | | | ||||| | || || | || Sbjct 108252 GATACTCCAGATAGAG-CACTGGCCGATGCCATTTATCTCAATGACAAGTATAGCATGGA 108310 Query 135625 TGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCA 135684 || ||||| ||| ||| | || || ||||||||||| || || ||| | || ||||| Sbjct 108311 CGGTCGCGACCCAAGTGGTTTTGTTGGATGTATGTGGTCAATATGTGGTATTCATGATCA 108370 Query 135685 AGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTAC 135744 || |||| || | || | ||||| || ||| | |||||||||||||| || || | Sbjct 108371 GGGGTGGAGAGAAAGAGAAATTTTTGGAAAAATTAGGTATATGAACTATGAAGGATGCAA 108430 Query 135745 AAGAAAATTTAATGTAAAT 135763 ||||| ||| | ||||| Sbjct 108431 GAGAAAGTTTGACATAAAT 108449 >seq3866 Length=782398 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || || || ||| | || || ||||| || || | || Sbjct 247798 CATGCAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTC 247857 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | |||||| ||||||||||| |||||||| || ||||||||||| Sbjct 247858 TGACACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCA 247917 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||||||||| || | ||||| | || | || ||||| || Sbjct 247918 ACAACGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTATAA 247977 Query 27167 CATTCAAAAGG 27177 ||| ||||||| Sbjct 247978 CATCCAAAAGG 247988 >seq2154 Length=352369 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | | || ||| || | || | || Sbjct 250911 ATGCAAATTTTTGTTAAAACCCTTACGGGTAAGACAAGTATTCTCGAGATTGAGTCATCA 250852 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | | ||| ||||| |||| ||||||||||| || || |||||| Sbjct 250851 GATTCTATTGAAAATTTAAAATCGAAAATCTAAGATAAAGAAGGCATTCCCCCGGATCAA 250792 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | |||| | || ||||| ||||||||||| || || | || |||||||| Sbjct 250791 CAACCTCTAATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACATTATCTGATTACAAT 250732 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || | ||||||| || | || || || | ||||| | ||||| Sbjct 250731 AT---ACAGGAGTCAACTCTTCACTTAGTACTTCGTTTAAGAGGTGG 250688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434896545350400