Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3666 89.7 4e-13 >seq3666 Length=820529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||||| || || ||||||||||| ||| | || Sbjct 197385 GACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAA 197444 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||| |||||||| |||||||| || | || ||||||||| Sbjct 197445 GACGGACGCACACTTTCCGACTACAACATTCAAAAAGAATCTACCCTTCACTTGGTTTTG 197504 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 197505 CGTCTCCGAGGTGG 197518 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||||| || || ||||||||||| ||| | || Sbjct 197613 GACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAA 197672 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||| |||||||| |||||||| || | || ||||||||| Sbjct 197673 GACGGACGCACACTTTCCGACTACAACATTCAAAAAGAATCTACCCTTCACTTGGTTTTG 197732 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 197733 CGTCTCCGAGGTGG 197746 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||||| || || ||||||||||| ||| | || Sbjct 197841 GACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAA 197900 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||| |||||||| |||||||| || | || ||||||||| Sbjct 197901 GACGGACGCACACTTTCCGACTACAACATTCAAAAAGAATCTACCCTTCACTTGGTTTTG 197960 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 197961 CGTCTCCGAGGTGG 197974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||||| || || ||||||||||| ||| | || Sbjct 198069 GACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAA 198128 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||| ||||||||||| || || ||| | || ||||| ||| Sbjct 198129 GACGGACGCACACTTTCCGACTACAACATCCAGAAGGAATCTACTCTTCACTTGGTGTTG 198188 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 198189 CGTCTCCGAGGTGG 198202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355844964966540