Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3666 134 3e-26 seq3866 132 1e-25 seq3604 123 6e-23 >seq3666 Length=820529 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | ||| || | ||| ||||| || || Sbjct 197495 GTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 197436 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 197435 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 197376 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| |||| ||||| ||| || || | || || |||||||| || Sbjct 197375 GGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGT 197316 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | ||||| Sbjct 197315 GAGGGTCTTTACGAAGATTTGCAT 197292 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | ||| || | ||| ||||| || || Sbjct 197723 GTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 197664 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 197663 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 197604 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| |||| ||||| ||| || || | || || |||||||| || Sbjct 197603 GGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGT 197544 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | ||||| Sbjct 197543 GAGGGTCTTTACGAAGATTTGCAT 197520 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | ||| || | ||| ||||| || || Sbjct 197951 GTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 197892 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 197891 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 197832 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| |||| ||||| ||| || || | || || |||||||| || Sbjct 197831 GGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGT 197772 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | ||||| Sbjct 197771 GAGGGTCTTTACGAAGATTTGCAT 197748 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| || || || |||||||| || || | ||| || | ||| ||||| || || Sbjct 198179 GTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 198120 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 198119 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 198060 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| |||| ||||| ||| || || | || || |||||||| || Sbjct 198059 GGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGT 198000 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || | ||||| Sbjct 197999 GAGGGTCTTTACGAAGATTTGCAT 197976 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || |||||||| ||||| || || | ||| || | ||| ||||| || || Sbjct 197267 GTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 197208 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || ||||| | || ||||| || || || | ||||||||||| ||||| || Sbjct 197207 CTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATTTT 197148 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| |||| ||||| ||||| || | |||||| || || || || Sbjct 197147 AGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTTTTACCAGT 197088 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 | ||| || ||||| | |||||| || Sbjct 197087 CAAAGTTTTGACAAAGATCTGCATGTT 197061 >seq3866 Length=782398 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||||||||||| | || | ||||||||| ||||||||||| |||||||| Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| || || || | ||||| || || || || || ||| || |||||| Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCG 247867 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || |||||||| || ||||| || ||||| ||||| || || || || || || || Sbjct 247866 ATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 247807 Query 211107 ACCTGCATTTT 211117 | ||||| || Sbjct 247806 ATTTGCATGTT 247796 >seq3604 Length=163256 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || || ||||| || || || || || | | || Sbjct 65661 ACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGT 65720 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| || || || |||||||| | || |||||||| || || | ||| Sbjct 65721 ACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCC 65780 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| || |||||| ||||| || | ||| || ||| || || | Sbjct 65781 TTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAA 65840 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| || || || || ||||| || ||||| | |||||| Sbjct 65841 AGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 Score = 123 bits (136), Expect = 6e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | |||||| || || ||||| || || || || || | | Sbjct 65886 TCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAA 65945 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||||||| || || || |||||||| | || |||||||| || || | Sbjct 65946 TGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGAT 66005 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| ||||| || |||||| ||||| || | ||| || ||| || || Sbjct 66006 TCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTC 66065 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | |||||| || || || || ||||| || ||||| | |||||| Sbjct 66066 CAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 123 bits (136), Expect = 6e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | |||||| || || ||||| || || || || || | | Sbjct 66114 TCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAA 66173 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||||||| || || || |||||||| | || |||||||| || || | Sbjct 66174 TGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGAT 66233 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| ||||| || |||||| ||||| || | ||| || ||| || || Sbjct 66234 TCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTC 66293 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | |||||| || || || || ||||| || ||||| | |||||| Sbjct 66294 CAAAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | |||||| || || ||||| || || || || || | | Sbjct 66342 TCCACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAA 66401 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||||||| || || || |||||||| | || |||||||| || || | Sbjct 66402 TGTACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGAT 66461 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||| ||||| || |||||| ||||| || | ||| || ||| || || Sbjct 66462 TCCTTCCTTGTCTTGGATTTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTC 66521 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | |||||| || || || || ||||| || ||||| | ||||| || Sbjct 66522 CAAAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCATCTT 66569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159092296427300