Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3666 140 2e-28 seq2154 114 9e-21 seq1800 84.2 1e-11 seq3365 82.4 5e-11 >seq3666 Length=820529 Score = 140 bits (154), Expect = 2e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||| | || || ||||| |||||| | |||||||| || Sbjct 197061 AACATGCAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCA 197120 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || | |||||| | ||||| | |||| | ||||| |||||| | || ||||| Sbjct 197121 TCTGATTCCATTGAAAATGTTAAAGCTAAAA-TCCAAGACAAGGAAGGTATCCCACCAGA 197179 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||||||||| || |||||||| || ||||| ||||||| |||||| | ||| || Sbjct 197180 TCAACAGCGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTA 197239 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| |||||||| || || Sbjct 197240 CAACATTCAAAAAGAATCTAC 197260 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| || || || | ||||| || || | Sbjct 197292 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197351 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||||| | |||| | || | | |||||||||||| | || ||||| || Sbjct 197352 GATTCCATTGAAAATGTTAAGGCCAAGA-TCCAAGACAAAGAAGGTATCCCACCAGACCA 197410 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || |||||||| || ||||| ||||||| |||||| | ||| ||||| Sbjct 197411 ACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAA 197470 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| |||||||| || || | || || ||||| Sbjct 197471 CATTCAAAAAGAATCTACCCTTCACTTGGTTTT 197503 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| || || || | ||||| || || | Sbjct 197520 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197579 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||||| | |||| | || | | |||||||||||| | || ||||| || Sbjct 197580 GATTCCATTGAAAATGTTAAGGCCAAGA-TCCAAGACAAAGAAGGTATCCCACCAGACCA 197638 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || |||||||| || ||||| ||||||| |||||| | ||| ||||| Sbjct 197639 ACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAA 197698 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| |||||||| || || | || || ||||| Sbjct 197699 CATTCAAAAAGAATCTACCCTTCACTTGGTTTT 197731 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| || || || | ||||| || || | Sbjct 197748 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 197807 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||||| | |||| | || | | |||||||||||| | || ||||| || Sbjct 197808 GATTCCATTGAAAATGTTAAGGCCAAGA-TCCAAGACAAAGAAGGTATCCCACCAGACCA 197866 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || |||||||| || ||||| ||||||| |||||| | ||| ||||| Sbjct 197867 ACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAA 197926 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| |||||||| || || | || || ||||| Sbjct 197927 CATTCAAAAAGAATCTACCCTTCACTTGGTTTT 197959 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| || || || | ||||| || || | Sbjct 197976 ATGCAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCT 198035 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||||| | |||| | || | | |||||||||||| | || ||||| || Sbjct 198036 GATTCCATTGAAAATGTTAAGGCCAAGA-TCCAAGACAAAGAAGGTATCCCACCAGACCA 198094 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || |||||||| || ||||| ||||||| |||||| | ||| ||||| Sbjct 198095 ACAACGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAA 198154 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCA 23841 ||| || || || || || | || || || || | | ||||| ||| || Sbjct 198155 CATCCAGAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGAGGTGGAGCA 198206 >seq2154 Length=352369 Score = 114 bits (126), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| ||||||||||| ||||| || || | | |||||| |||| || Sbjct 250914 AAGATGCAAATTTTTGTTAAAACCCTTACGGGTAAGACAAGTATTCTCGAGATTGAGTCA 250855 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| |||||| ||||| || |||||||| | || || ||| Sbjct 250854 TCAGATTCTATTGAAAATTTAAAATCGAAAATCTAAGATAAAGAAGGCATTCCCCCGGAT 250795 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| | | |||| ||||| ||||| ||| ||||||| | || || ||| |||||| Sbjct 250794 CAACAACCTCTAATTTTTGCTGGCAAGCAATTGGAAGATGGTCGTACATTATCTGATTAC 250735 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 || |||| | ||||| || | || ||||| Sbjct 250734 AATATAC---AGGAGTCAACTCTTCACTTAGT 250706 >seq1800 Length=381758 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || ||||| || ||||| |||||||| ||||| ||||| ||||| | || Sbjct 276022 AGGTATTCCTCCGGATCAGCAACGTTTGATATTTGCTGGCAAGCAACTTGAAGATGGGCG 276081 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831 ||| | ||||||||||| |||||||| || || | || || ||| | || ||| | Sbjct 276082 TACTCTGTCAGATTACAACATTCAAAAAGAATCTACCCTCCACTTGGTTCTTAGATTGAG 276141 Query 23832 AGGAGG 23837 ||| || Sbjct 276142 AGGTGG 276147 >seq3365 Length=261510 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| ||||||||||||||||| ||||| || |||||||| ||||| || Sbjct 112492 AAGATGCAAATTTTTGTTAAAACCCTCACGGGTAAAACAATTACTCTCGAGGTTGAGTCA 112551 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715 | || || |||||| ||||| ||||| || ||||||||| Sbjct 112552 TCAGATTCTATTGAAAATGTAAAATCGAAAATCCAAGATAAAGAAGGT 112599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337993039642160