Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3604 140 8e-28 seq3666 125 2e-23 seq1631 93.3 1e-13 seq1800 91.5 4e-13 >seq3604 Length=163256 Score = 140 bits (154), Expect = 8e-28 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || |||||||| || | |||||| || | || || Sbjct 66345 ACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGT 66404 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || |||||||| | ||| |||||||| || || || || Sbjct 66405 ACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCC 66464 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||| ||| || |||||| ||| || | ||| || | ||| || || | Sbjct 66465 TTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCA 66523 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| || ||||| |||| |||||| | || | |||||| || Sbjct 66524 AAGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATTTGCATCTT 66569 Score = 136 bits (150), Expect = 9e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || |||||||| || | |||||| || | || || Sbjct 65661 ACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGT 65720 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || |||||||| | ||| |||||||| || || || || Sbjct 65721 ACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCC 65780 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||| ||| || |||||| ||| || | ||| || | ||| || || | Sbjct 65781 TTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCA 65839 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||| || ||||| || | |||||| | || | ||||||| Sbjct 65840 AAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 65883 Score = 136 bits (150), Expect = 9e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || |||||||| || | |||||| || | || || Sbjct 65889 ACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGT 65948 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || |||||||| | ||| |||||||| || || || || Sbjct 65949 ACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCC 66008 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||| ||| || |||||| ||| || | ||| || | ||| || || | Sbjct 66009 TTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCA 66067 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||| || ||||| || | |||||| | || | ||||||| Sbjct 66068 AAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66111 Score = 136 bits (150), Expect = 9e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || || |||||||| || | |||||| || | || || Sbjct 66117 ACGAAGACGGAGTACTAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGT 66176 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || |||||||| | ||| |||||||| || || || || Sbjct 66177 ACGGCCATCTTCCAATTGTTTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCC 66236 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||||||||| ||| || |||||| ||| || | ||| || | ||| || || | Sbjct 66237 TTCCTTGTCTTGGAT-TTTAGCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCA 66295 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||| || ||||| || | |||||| | || | ||||||| Sbjct 66296 AAGTGATGGTTTTGCCAGTAAGAGTTTTCACAAAAATTTGCATT 66339 >seq3666 Length=820529 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || ||||||||||| | ||||| |||| | || | || ||||| || || Sbjct 197495 GTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 197436 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | ||||||||||| || || |||||||| |||||||||||||| Sbjct 197435 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 197376 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| |||| || || | ||| || || || || || ||||| || || Sbjct 197375 GGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGT 197316 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || |||| ||| | |||||| Sbjct 197315 GAGGGTCTTTACGAAGATTTGCAT 197292 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || ||||||||||| | ||||| |||| | || | || ||||| || || Sbjct 197723 GTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 197664 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | ||||||||||| || || |||||||| |||||||||||||| Sbjct 197663 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 197604 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| |||| || || | ||| || || || || || ||||| || || Sbjct 197603 GGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGT 197544 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || |||| ||| | |||||| Sbjct 197543 GAGGGTCTTTACGAAGATTTGCAT 197520 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || ||||||||||| | ||||| |||| | || | || ||||| || || Sbjct 197951 GTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 197892 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | ||||||||||| || || |||||||| |||||||||||||| Sbjct 197891 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 197832 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| |||| || || | ||| || || || || || ||||| || || Sbjct 197831 GGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGT 197772 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || |||| ||| | |||||| Sbjct 197771 GAGGGTCTTTACGAAGATTTGCAT 197748 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| ||||| || |||| ||||| |||| | || | || ||||| || || Sbjct 198179 GTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 198120 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | ||||||||||| || || |||||||| |||||||||||||| Sbjct 198119 CTTTCCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 198060 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||| |||| || || | ||| || || || || || ||||| || || Sbjct 198059 GGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTTTCCTGT 198000 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | || |||| ||| | |||||| Sbjct 197999 GAGGGTCTTTACGAAGATTTGCAT 197976 Score = 116 bits (128), Expect = 9e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || ||||||||||| | ||||| |||| | || | || ||||| || || Sbjct 197267 GTGAAGGGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAAGTTG 197208 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| | || ||||| || || || |||||||||||||||||||| || Sbjct 197207 CTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGAT-TT 197149 Query 225630 TTGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | |||| | || ||| |||| || || | || || || || ||||| || || || | Sbjct 197148 TAGCTTTAACATTTTCAATGGAATCAGATGACTCAACTTCCAAAGTGATAGTTTTACCAG 197089 Query 225689 TCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||| | || | ||||| || Sbjct 197088 TCAAAGTTTTGACAAAGATCTGCATGTT 197061 >seq1631 Length=1153724 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 5019 CTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGT 5078 || ||||| || ||||||||| | || |||| || || |||| ||| ||||||||||| Sbjct 948556 CTGCAATATCTGGCCCCATACTCTGGATGTGCCATGGGTGAATTTTTCAGAGATAATGGC 948497 Query 5079 AAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 ||||| ||| | |||||||| ||||||||| ||||||| Sbjct 948496 AAACACGCTCTTATCATCTATGATGATTTATCTAAACAA 948458 >seq1800 Length=381758 Score = 91.5 bits (100), Expect = 4e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | |||||| || ||||||||||| | |||||||| | || ||| | ||| Sbjct 276136 TCTAAGAACCAAGTGGAGGGTAGATTCTTTTTGAATGTTGTAATCTGACAGAGTACGCCC 276077 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 |||||| || ||||| ||||| || || | ||||| || || || ||||||||| Sbjct 276076 ATCTTCAAGTTGCTTGCCAGCAAATATCAAACGTTGCTGATCCGGAGGAATACCT 276022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192469777189880