Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq40 131 2e-25 seq2 91.5 2e-13 >seq40 Length=47542 Score = 131 bits (144), Expect = 2e-25 Identities = 165/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||| ||| | || || || || | ||| ||||||| ||| ||||| || Sbjct 40231 TCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCTTC 40172 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | |||||||| ||| || ||| |||||| || ||||| ||||| ||||| |||||||| Sbjct 40171 ATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATGCA 40112 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG---TATCCACCGTTGTGCCCAATCAGCC 48341 | ||| || || || | |||| | | ||||||| | |||||||| ||| Sbjct 40111 ACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTGCC 40052 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 || || |||||||| ||||| ||||| ||||||||||| | ||||| Sbjct 40051 TTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 40006 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48407 AACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTG 48466 || ||| ||||| ||||| | |||||||||||| || || ||||| || || || || Sbjct 39914 AATGTATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTG 39855 Query 48467 AAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAA 48526 ||| || ||||||||||| || || || | || || || | ||||||||||| | | Sbjct 39854 AAACCCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCAACAAG 39795 Query 48527 ATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA 48586 ||| ||||| || || ||||| ||||||||||||||||||||| || ||||| | Sbjct 39794 ATTTTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTG 39735 Query 48587 TTTTTCGTTGGAAGTCAGTTTATTCCAGTCAT 48618 ||| | ||||| | ||||||| |||| Sbjct 39734 ACGTTCATCATCAGTCAATCTATTCCAATCAT 39703 >seq2 Length=2033018 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/208 (70%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 77354 TGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 |||||| | ||| | | ||||| ||| | | ||||||||| ||||||||| ||||| || Sbjct 1646793 TGATCCTTGATAAGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 1646734 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 || || ||||| | || || || || | ||| || | | ||| |||| | Sbjct 1646733 CGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCGTGATTCAGGTGAGCC 1646674 Query 77474 AAACGGATAATGTAAA-----AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528 ||| ||| ||| | | |||||||| |||||||| || |||| ||||||||| Sbjct 1646673 AAATGGA-AATCTCATCATTGAGAATAAA----TCTGCTAACCCTTGAATACCAATACCA 1646619 Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTT 77556 ||||| | |||||| ||||| ||| ||| Sbjct 1646618 ATAGGACGATGTCTTTTATTAGAAGTTT 1646591 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 |||||||| ||| ||||| | | | ||||||||||||||| ||||| || || || || Sbjct 1635192 ATATGTTTTATATGGTCCATATTTAGTAGCTAGTTCACAACTTGCTTCTAAAGCACCATA 1635251 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||||| ||||| ||| | || || ||| | ||||| || ||||||| ||||| Sbjct 1635252 GTAAATAGTTTCATGAATTTGTTTGTTAAGAATTCTAGCTTCTTTATTATCAAAAGGATA 1635311 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530 | | |||||| |||||||||||| || | || || ||||| Sbjct 1635312 TTTCATTTTAATAAATAAATCTGCTAATCCTTGGATACCGATTCCAAT 1635359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694633892892800