Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq40 140 5e-28 seq2 98.7 1e-15 seq48 84.2 3e-11 >seq40 Length=47542 Score = 140 bits (154), Expect = 5e-28 Identities = 158/209 (76%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 |||||||| ||||| | |||||||||||||||||| || || || || || ||||| Sbjct 39910 TATGTATCAATTAATAAACTATACATTTCTGAATGTATATTCTCCATCATTATTTGAAAC 39851 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATT 47018 || ||||||||||| || || || | || || ||| | ||||||||||| |||| ||| Sbjct 39850 CCATAAAAACATCTAGCCTCCGTCACTTGAACTTCTTGAGAAAATCGTTCA-ACAAGATT 39792 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 ||||| || || ||||| ||||||||||||||| ||||| || ||||| | Sbjct 39791 TTCATTGACAATACCATCTGAAGCAGCAAAAAATGCTAATACGTGGGATATAAAGTGACG 39732 Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCAT 47107 |||||| ||||| | ||||||| |||| Sbjct 39731 TTCATCATCAGTCAATCTATTCCAATCAT 39703 Score = 131 bits (144), Expect = 2e-25 Identities = 165/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||| ||| | || || || || | || ||||||| ||| || || || Sbjct 40231 TCATCTCTAGAAATCAGCTCATTGCTGAAAGTTAAACCTGGCATTAATCCTCGTTTCTTC 40172 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||||| || || ||| |||||| || ||||| ||||| || || || ||||| Sbjct 40171 ATCCAAAATAATGCAGCAAAACTTCCAGAGAAAAATATACCTTCAACGGCAGCAAATGCA 40112 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCC 46830 || | ||| || || || | || | | ||| |||||| | |||||||||| ||| Sbjct 40111 ACTAATCTTTCACCAAAAGTCGCTTTACTATCGCTTATCCACTTCAGAGCCCAATCTGCC 40052 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 ||||| |||||||| ||||| ||||| ||||||||||| | ||||| Sbjct 40051 TTTTTTTTTACACACGGCATGGTTTCAATAGCATTAAATAAAAAGT 40006 >seq2 Length=2033018 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 ||||| ||||| | ||||||||| || || | |||||||| ||||||||||| ||||| Sbjct 1647035 GTATAGGGTTCTATAGATTCATTATTGCCAAGGATTTGAGCTGTTGAAGCAGTAGGCATT 1646976 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT- 75882 ||||| | || || |||||| | ||||||| | ||||| ||||||| |||||| Sbjct 1646975 GGTGCTAATAACAATGAATTTCTTACACCATGTTTAGCAATTTTTTCTTTTA-ATATTTC 1646917 Query 75883 CCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||||| ||| | ||| || |||| ||| | ||| || |||| ||| Sbjct 1646916 CCAATTCCATAAATCACTGGGCTTCACATTCCACATATCATACTGTAAAAT 1646866 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/212 (70%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 75949 TGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAA 76008 |||||| | ||| | | ||||| || | |||||||||| ||| ||||| || ||||| Sbjct 1646793 TGATCCTTGATAAGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 1646734 Query 76009 CGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATC 76068 |||||| ||||| | || || || || | |||||| | | | | |||| | | Sbjct 1646733 CGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCGTGATTCAGGTGAGCC 1646674 Query 76069 AAAAGGATAATGTAAA-----AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 ||| ||| ||| | | ||||||||| |||||| || |||| ||||||||| Sbjct 1646673 AAATGGA-AATCTCATCATTGAGAATAAAT----CTGCTAACCCTTGAATACCAATACCA 1646619 Query 76124 ATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 ||||| | |||||| ||||| ||| |||| || Sbjct 1646618 ATAGGACGATGTCTTTTATTAGAAGTTTCTGC 1646587 >seq48 Length=686774 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 76322 TGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTC 76381 || ||||| || || || |||||||||||||| || || |||||||||| ||| ||||| Sbjct 303715 TGAATTATTTCAGTACAAAGATTACTACACTTAATTGTACCAAGATTTTTTTGATTGCTT 303774 Query 76382 TTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGA 76437 ||| || || | || ||||| || ||| | || | ||||||||||| || || Sbjct 303775 TTTGCATTGCAAGCATCTTTATACAGCACATATGGCATACCAGTTTCAATTTGAGA 303830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712898575046400