Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3604 123 6e-23 seq3866 102 2e-16 seq3666 86.0 1e-11 >seq3604 Length=163256 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| ||||| ||||| || || ||||| || | ||| || | |||||||| | | Sbjct 66364 TGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGT 66423 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | | ||| ||||| | | |||||||||||| ||||| ||||| Sbjct 66424 TTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTA 66483 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| | || | ||| ||| |||||||| | ||| || |||||||| || Sbjct 66484 GCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTC 66543 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| |||| ||||| || Sbjct 66544 AGAGTTTTCACAAAGATTTGCATCTT 66569 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| ||||| ||||| || || ||||| || | ||| || | |||||||| | | Sbjct 65680 TGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGT 65739 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | | ||| ||||| | | |||||||||||| ||||| ||||| Sbjct 65740 TTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTA 65799 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| | || | ||| ||| |||||||| | ||| || |||||||| || Sbjct 65800 GCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTA 65859 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| || | |||||| Sbjct 65860 AGAGTTTTCACAAAAATTTGCATT 65883 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| ||||| ||||| || || ||||| || | ||| || | |||||||| | | Sbjct 65908 TGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGT 65967 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | | ||| ||||| | | |||||||||||| ||||| ||||| Sbjct 65968 TTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTA 66027 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| | || | ||| ||| |||||||| | ||| || |||||||| || Sbjct 66028 GCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTA 66087 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| || | |||||| Sbjct 66088 AGAGTTTTCACAAAAATTTGCATT 66111 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| ||||| ||||| || || ||||| || | ||| || | |||||||| | | Sbjct 66136 TGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGATAATGTACGGCCATCTTCCAATTGT 66195 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||||||||| | | ||| ||||| | | |||||||||||| ||||| ||||| Sbjct 66196 TTTCCGGCGAAGATCAATCGCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTA 66255 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| | || | ||| ||| |||||||| | ||| || |||||||| || Sbjct 66256 GCTTTCACATTTTCAATAGAGTCCGAAGATTCTACTTCCAAAGTGATGGTTTTGCCAGTA 66315 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||| || | |||||| Sbjct 66316 AGAGTTTTCACAAAAATTTGCATT 66339 >seq3866 Length=782398 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 ||||||||||| ||||| | ||||| | |||||||| || || ||||||||||| Sbjct 247986 TTTTGGATGTTATAATCCGACAAAGTACGTCCATCTTCAAGCTGCTTGCCGGCGAAGATC 247927 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | || || || | | ||| ||||| || ||||||||||| ||||||| | || Sbjct 247926 AAACGTTGTTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTGACATTTTCG 247867 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| ||| ||| || ||||| || || || || || || || || |||||||| Sbjct 247866 ATAGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAA 247807 Query 152097 ACCTGCATTTT 152107 | ||||| || Sbjct 247806 ATTTGCATGTT 247796 >seq3666 Length=820529 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || || ||||||||||| |||| | || | || ||||| | Sbjct 198182 CAAG-TGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGTGTGCGTCCGTCTTCAA 198124 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| ||||| | | || ||||| | | ||| ||||| || ||||| Sbjct 198123 GTTGCTTT--CCGGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTGTCTTG 198066 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || ||| | || | | || || |||||||| | || || || || Sbjct 198065 GATCTTGGCCTTAACATTTTCAATGGAATCAGATGATTCTACTTCCAATGTTATGGTCTT 198006 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| ||||||| ||||| Sbjct 198005 TCCTGTGAGGGTCTTTACGAAGATTTGCAT 197976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153761371017420