Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19]
4,020 sequences; 347,296,088 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3866 158 3e-33
seq3666 138 3e-27
seq3604 127 5e-24
>seq3866
Length=782398
Score = 158 bits (174), Expect = 3e-33
Identities = 146/185 (79%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||||||||| || ||||| || || |||||||| ||||| || || |||
Sbjct 247802 CAAATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGTCTTCTGAC 247861
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || |||||| || ||||| || |||||||| ||||| || || || |||
Sbjct 247862 ACTATCGAAAATGTCAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAACAA 247921
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || ||||| ||||||||| | ||| | | ||||||||| ||
Sbjct 247922 CGTTTGATCTTCGCCGGCAAGCAGCTTGAAGATGGACGTACTTTGTCGGATTATAACATC 247981
Query 178104 CAAAA 178108
|||||
Sbjct 247982 CAAAA 247986
>seq3666
Length=820529
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||||||||| || || || | || || ||| || ||
Sbjct 197295 CAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCTGAT 197354
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||| || || || || ||||| || ||||||||||| ||||| || ||||| |||
Sbjct 197355 TCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAA 197414
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| |||||||| || || ||||| ||| | || ||| |||| || ||| |
Sbjct 197415 CGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATT 197474
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| || || || | |||||| | ||| ||
Sbjct 197475 CAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGA 197513
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||||||||| || || || | || || ||| || ||
Sbjct 197523 CAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCTGAT 197582
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||| || || || || ||||| || ||||||||||| ||||| || ||||| |||
Sbjct 197583 TCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAA 197642
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| |||||||| || || ||||| ||| | || ||| |||| || ||| |
Sbjct 197643 CGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATT 197702
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| || || || | |||||| | ||| ||
Sbjct 197703 CAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGA 197741
Score = 138 bits (152), Expect = 3e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||||||||| || || || | || || ||| || ||
Sbjct 197751 CAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCTGAT 197810
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||| || || || || ||||| || ||||||||||| ||||| || ||||| |||
Sbjct 197811 TCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAA 197870
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| |||||||| || || ||||| ||| | || ||| |||| || ||| |
Sbjct 197871 CGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATT 197930
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| || || || | |||||| | ||| ||
Sbjct 197931 CAAAAAGAATCTACCCTTCACTTGGTTTTGCGTCTCCGA 197969
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||||||||| || || || | || || ||| || ||
Sbjct 197979 CAAATCTTCGTAAAGACCCTCACAGGAAAGACCATAACATTGGAAGTAGAATCATCTGAT 198038
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||| || || || || ||||| || ||||||||||| ||||| || ||||| |||
Sbjct 198039 TCCATTGAAAATGTTAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAACAA 198098
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| |||||||| || || ||||| ||| | || ||| |||| || ||| ||
Sbjct 198099 CGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATC 198158
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || ||||| || || || | || ||| | ||| ||
Sbjct 198159 CAGAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGA 198197
Score = 107 bits (118), Expect = 5e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || |||||| | || || ||||| ||||| | || || || || ||
Sbjct 197067 CAGATCTTTGTCAAAACTTTGACTGGTAAAACTATCACTTTGGAAGTTGAGTCATCTGAT 197126
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||| || || || ||| || || || ||||| ||||| ||||| || || || ||
Sbjct 197127 TCCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCAGATCAACAG 197186
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| |||||||| || || ||||| ||| | || ||| |||| || ||| |
Sbjct 197187 CGTTTGATCTTTGCCGGAAAGCAACTTGAAGACGGACGCACACTTTCCGACTACAACATT 197246
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| || || || | || ||| | ||| ||
Sbjct 197247 CAAAAAGAATCTACCCTTCACTTGGTGTTGCGTCTCCGA 197285
>seq3604
Length=163256
Score = 127 bits (140), Expect = 5e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||||||||| || || ||||| ||||| | || || ||| || |||
Sbjct 65879 CAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCGGAC 65820
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || || ||| || || || ||||| ||||||||||| || ||||| ||
Sbjct 65819 TCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAACAG 65760
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||||||||| | |||||||| | || | | || || || |
Sbjct 65759 CGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAATATT 65700
Query 178104 CAAAAAGAATCAACACTGCA 178123
|| |||||||| ||||| ||
Sbjct 65699 CAGAAAGAATCTACACTTCA 65680
Score = 127 bits (140), Expect = 5e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||||||||| || || ||||| ||||| | || || ||| || |||
Sbjct 66107 CAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCGGAC 66048
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || || ||| || || || ||||| ||||||||||| || ||||| ||
Sbjct 66047 TCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAACAG 65988
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||||||||| | |||||||| | || | | || || || |
Sbjct 65987 CGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAATATT 65928
Query 178104 CAAAAAGAATCAACACTGCA 178123
|| |||||||| ||||| ||
Sbjct 65927 CAGAAAGAATCTACACTTCA 65908
Score = 127 bits (140), Expect = 5e-24
Identities = 148/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||||||||| || || ||||| ||||| | || || ||| || |||
Sbjct 66335 CAAATTTTTGTGAAAACTCTTACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCGGAC 66276
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || || ||| || || || ||||| ||||||||||| || ||||| ||
Sbjct 66275 TCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAACAG 66216
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||||||||| | |||||||| | || | | || || || |
Sbjct 66215 CGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAATATT 66156
Query 178104 CAAAAAGAATCAACACTGCA 178123
|| |||||||| ||||| ||
Sbjct 66155 CAGAAAGAATCTACACTTCA 66136
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || ||||||||||| || || ||||| ||||| | || || ||| || |||
Sbjct 66563 CAAATCTTTGTGAAAACTCTGACTGGCAAAACCATCACTTTGGAAGTAGAATCTTCGGAC 66504
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || || || || ||| || || || ||||| ||||||||||| || ||||| ||
Sbjct 66503 TCTATTGAAAATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAACAG 66444
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||||||||| | |||||||| | || | | || || || |
Sbjct 66443 CGATTGATCTTCGCCGGAAAACAATTGGAAGATGGCCGTACATTATCTGACTACAATATT 66384
Query 178104 CAAAAAGAATCAACACTGCA 178123
|| |||||||| ||||| ||
Sbjct 66383 CAGAAAGAATCTACACTTCA 66364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203669200319880
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |