Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20giraulti_20[genbank_20GCA_5F000004775.1_202010-01-15] 4,912 sequences; 283,606,953 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3620 102 1e-16 seq3622 95.1 2e-14 seq4270 93.3 6e-14 seq2005 89.7 8e-13 >seq3620 Length=288302 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| ||||||||||| | || |||||||| ||| ||||| ||||| Sbjct 90034 CCTCCACGAAGTCGCAATACCAAATGCAGCGTGGATTCTTTTTGTATGTTATAGTCTGAC 89975 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct 89974 AATGTGCGCCCATCCTCTAATTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 89915 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||| || || || || ||| || ||| Sbjct 89914 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCGATCGTGTCGGAAGCCTCGACT 89855 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||| |||||||| || | ||| |||| ||| || ||||| Sbjct 89854 TCAAGTGTGATGGTTTTACCCGTGAGTGTCTTAACGAAGATCTGCAT 89808 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| ||||| | ||| ||||| || | ||||||||||| ||||| || || | Sbjct 91860 TTCCACCCCTAAGACGTAAGACCAAGTGGAGTGTAGATTCTTTTTGAATATTGTAGTCGG 91801 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || ||||||||||| ||||| || || | ||||| || |||| Sbjct 91800 AGAGCGTACGACCATCTTCCAATTGTTTTCCGGCAAAGATTAAACGCTGCTGGTCTGGAG 91741 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||| ||||| || || Sbjct 91740 GGATTCCCTCTTTGTCCTG 91722 >seq3622 Length=3730247 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24027 AACATAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTC 24086 |||||| |||||||| ||||||||| || || | |||||||| ||||||| | ||| Sbjct 2266338 AACATATCCACATTTAGGAAACCATCTAGCATGCTCTATCCAAGCATCATCGGTTTCTTC 2266397 Query 24087 CCATTTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATC 24131 ||| || |||| ||||||||||||| ||| ||| |||||| ||| Sbjct 2266398 CCAATTTCTTAATCCACCATCACAATGAAAACATCTAACTTGATC 2266442 >seq4270 Length=22512 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/184 (68%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 146095 TATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCT 146154 ||| || ||||| || | |||| | ||| ||||| ||||| |||||||||||||||| Sbjct 4618 TATGTTGTAATCGGATAATGTTCGACCATCCTCTAACTGTTTGCCAGCAAAAATCAATCG 4677 Query 146155 TTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGT 146214 || ||||| |||||||| ||||| |||||||| ||| Sbjct 4678 CTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGCTTTAACATTTTCTATAGT 4737 Query 146215 ATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTG 146274 ||||||| ||| || |||| || || || || ||||| || ||||| | || ||||| Sbjct 4738 ATCTGAAGCTTCGACCTCTAAAGTTATGGTCTTGCCTGTCAAAGTTTTGACAAAAATTTG 4797 Query 146275 CATT 146278 |||| Sbjct 4798 CATT 4801 >seq2005 Length=1592806 Score = 89.7 bits (98), Expect = 8e-13 Identities = 153/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | ||||| || | |||||| ||||| ||||| ||||| | Sbjct 905045 TTCCTCCTCTTAGACGCAGGACCAAGTGAAGAGTAGACTCTTTTTGAATATTGTAATCAG 904986 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| || | ||||| |||||||| || | | || || || |||| Sbjct 904985 AAAGAGTACGTCCATCTTCCAGCTGTTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAG 904926 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||||||||| ||||| || |||||| ||| | Sbjct 904925 GAATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTTTCAATTGTGTCTGAAGCTTCAA 904866 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 | || || || || || || || || |||||||||| || ||||||||| Sbjct 904865 CCTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTAACAAAGATTTGCATT 904816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743480747479040