Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20giraulti_20[genbank_20GCA_5F000004775.1_202010-01-15] 4,912 sequences; 283,606,953 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4225 120 2e-22 seq415 120 2e-22 seq1068 118 6e-22 seq1338 116 2e-21 seq297 104 1e-17 seq4679 86.0 3e-12 >seq4225 Length=1874699 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||| ||| ||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 466904 TAATAACAAAA-AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 466962 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 466963 CGACGCTCTAACCAACTGAGCTAATGGGCC 466992 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| || ||| ||||||||||||| |||||||||| || ||||||||||||||||| Sbjct 467829 TAAGAATAAA--AAATTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCA 467772 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 467771 CGACGCTCTAACCAACTGAGCTAATGGGCC 467742 >seq415 Length=7633462 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1853940 TAAAAAA--AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 1853997 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 1853998 CGCTCTAACCAACTGAGCTAATGGGCC 1854024 >seq1068 Length=2032934 Score = 118 bits (130), Expect = 6e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 589042 AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 589101 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| Sbjct 589102 CAACTGAGCTAATGGGCCG 589120 >seq1338 Length=3528536 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1813576 AAAACAAAAAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1813635 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1813636 GCTCTAACCAACTGAGCTAATGGGCC 1813661 >seq297 Length=3171543 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 1819172 TTAAAGAAAAA--AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 1819115 Query 11499 ACGACGCTCTRACCAACTGAGCTAA 11523 |||||||||| |||| ||||||||| Sbjct 1819114 ACGACGCTCTAACCAGCTGAGCTAA 1819090 >seq4679 Length=2976862 Score = 86.0 bits (94), Expect = 3e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 3717 TCGGTGTAAACGCCCGGCCAACCATTTCTACCACACCCATTCCCCCACGACACGATTCCA 3776 || ||||| ||||| || | || || || |||| ||||| ||||| || ||||||||| Sbjct 170530 TCAGTGTATACGCCAGGGTATCCCTTCCTCGCACATCCATTGCCCCATGAGACGATTCCA 170589 Query 3777 GCCAACCTATCGTTAACAACCATTGGTCCACCCGAATCCCCTTGACACGCGTCTTTACCA 3836 || | | | || ||| | |||||||| || || || ||||| | |||||||||| Sbjct 170590 GCTTGACGACCAGCAATAACTAGCGGTCCACCAGAGTCACCCTGACAGGTGTCTTTACCA 170649 Query 3837 CCTCCTGGTGACGCCGCACATATTTGA 3863 ||| |||| | || ||||| || ||| Sbjct 170650 CCTGCTGGGAAAGCGGCACAGATCTGA 170676 Lambda K H 0.636 0.409 0.916 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475545829312