Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20giraulti_20[genbank_20GCA_5F000004775.1_202010-01-15] 4,912 sequences; 283,606,953 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq3484 210 4e-50 seq2387 201 2e-47 seq3401 197 3e-46 seq3196 87.8 4e-13 seq1294 86.0 1e-12 seq813 86.0 1e-12 >seq3484 Length=4033909 Score = 210 bits (232), Expect = 4e-50 Identities = 171/208 (82%), Gaps = 11/208 (5%) Strand=Plus/Minus Query 713 AGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGTTG 772 |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||| | Sbjct 105664 AGTAGATTACATACCTAGACCAGTAAAATAATAAATCTCTCAGAACACATGTAATTGTCG 105605 Query 773 ACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCCAA 832 | ||||| ||| ||||| ||||||||||||||| |||||||||||| | Sbjct 105604 -----GTCGAAGTCAAT------AAACAGGTGATCTGAGGCTTTCTTTTTTACTGGCCCA 105556 Query 833 GGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGCAG 892 |||| ||||||| |||| | ||||||| ||||||| | |||||||| |||| ||||| Sbjct 105555 GGTGCGTATACTGTTTTGTTCCTCGACGGTGCCGGAAAGCGGCAACTTCGTTTTACGCAG 105496 Query 893 CGGCCAGAAAGTTGTCACTTTCCGGCCG 920 |||||||||||||| | ||||||||||| Sbjct 105495 CGGCCAGAAAGTTGGCGCTTTCCGGCCG 105468 >seq2387 Length=144888 Score = 201 bits (222), Expect = 2e-47 Identities = 179/222 (81%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||| ||||||||| |||||||||||||||| ||| |||||||| ||||| ||||||| Sbjct 139636 ATAGTAGATTACATACNTAGGCCAGTAAAATAAGAAATGTCTCAGATCACATTTAATTGT 139695 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | |||| | |||| |||| | ||||||||||||||||||||| |||||||| ||| Sbjct 139696 CGGTCGAGTCAAAGCTGAGGTCAATAAACATGTGATCTGAGGCTTT-CTTTTTAC-AGCC 139753 Query 831 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGC 890 ||||||||||| || || | ||||||||| ||||||| | || || || |||| |||| Sbjct 139754 CAGGTGTGTATATTACTTGTTTGCTCGACGGTGCCGGAAAGCGGTAAGTTCGTTTCGCGC 139813 Query 891 AGCGGCCAGAAAGTTGTCACTTTCCGGCCGGAGGGCAGAAAA 932 |||||||||||| || | ||| | |||||||| |||| Sbjct 139814 AGCGGCCAGAAACTTTAAGCAATCCAACTGGAGGGCACAAAA 139855 >seq3401 Length=10799 Score = 197 bits (218), Expect = 3e-46 Identities = 176/219 (80%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||| ||||||||| |||||||||||||||| ||| |||||||| ||||| ||||||| Sbjct 1778 ATAGTAGATTACATACGTAGGCCAGTAAAATAAGAAATGTCTCAGATCACATTTAATTGT 1719 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | |||| | |||| |||| | ||||||||||||||||||||| ||||||| ||| Sbjct 1718 CGGTCGAGTCAAAGCTGAGGTCAATAAACATGTGATCTGAGGCTTTCTTTTTTAC-AGCC 1660 Query 831 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGC 890 ||||||||||| || || | ||||||||| ||||||| | || || || |||| |||| Sbjct 1659 CAGGTGTGTATATTACTTGTTTGCTCGACGGTGCCGGAAAGCGGTAAGTTCGTTTCGCGC 1600 Query 891 AGCGGCCAGAAAGTTGTCACTTTCCGGCCGGAGGGCAGA 929 |||||||||||| || | ||| | |||||||||| Sbjct 1599 AGCGGCCAGAAACTTTAAGCAATCCAACTGGAGGGCAGA 1561 >seq3196 Length=912541 Score = 87.8 bits (96), Expect = 4e-13 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 716 ATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTA-ATTGTTGAC 774 ||||||| || ||||||| | ||||||| || ||| || | | ||||| |||| | | Sbjct 436041 ATATTACGTATCTAGGCCGGGAAAATAAAGAATGTCCCATATCGCATGTGTATTGCCGCC 435982 Query 775 CGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCCAAGG 834 |||||| ||||| ||| || |||||||||||||||| || || || || | |||| || Sbjct 435981 CGAGGCAAAGCCGAGGGTGGCAAACATGTGATCTGA-GCATTCTTTGTTCCCGGCCGTGG 435923 Query 835 TGTGTATACTATTTT 849 || ||| | ||||| Sbjct 435922 TGCGTACGCGATTTT 435908 >seq1294 Length=328070 Score = 86.0 bits (94), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 841 TACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGCAGCGGCCAGA 900 |||| | ||||||||| || | ||| | | |||||||| |||| ||||||||||| || Sbjct 62742 TACTGCTGTTCTGCTCGGCGGTGACGGGAGGCGGCAACTTCGTTTCGCGCAGCGGCCGGA 62801 Query 901 AAGTTGTCACTTTCCGGCCGGAGGGCAGAAAATGT 935 | ||| | |||||||||||||||||| || |||| Sbjct 62802 ATGTTTGCGCTTTCCGGCCGGAGGGCATAACATGT 62836 >seq813 Length=2416146 Score = 86.0 bits (94), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 ||||||||||||||||||||||| | ||||||| || ||| |||| | | | Sbjct 2393530 ATAGTATATTACATACCTAGGCCTGGAAAATAAAGAATGTCCCAGATCNNNNNNNNNTTT 2393589 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 | || |||||||||| ||| || |||||||| ||||||| | || || || | | Sbjct 2393590 CGCCCTAGGCGAAGCCGAGGGTGGCAAACATGCGATCTGA-ACATTCTTTGTTCGCAGAC 2393648 Query 831 AAGGTGTGTATACTATTTTTC-TGCTCGACGTAGCCGGAATGTG 873 ||||||||| | ||||| | ||| | | |||| ||||| ||| Sbjct 2393649 GTGGTGTGTATGCGATTTTACATGCCCCA-GTAGTCGGAAAGTG 2393691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102618013942080