Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20giraulti_20[genbank_20GCA_5F000004775.1_202010-01-15] 4,912 sequences; 283,606,953 total letters Query= NC_008993.1 Length=5530 Score E Sequences producing significant alignments: (Bits) Value seq3401 143 9e-31 seq3484 141 3e-30 seq2387 138 4e-29 >seq3401 Length=10799 Score = 143 bits (158), Expect = 9e-31 Identities = 168/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 3939 TCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACA 3998 ||||||||||| ||| || || |||| ||||||||||| ||||||| || || | Sbjct 1561 TCTGCCCTCCAGTTGGATTGCTTAAAGTTTCTGGCCGCTGCGCGAAACGAACTTACCGCT 1620 Query 3999 TTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCT 4058 ||||||| ||||| | | | || || | |||| |||| ||| ||||||| ||||||| Sbjct 1621 TTCCGGCACCGTCGAGCAAACAAGTAATATACACACCTGGGCTGTAAAAAAG-AAAGCCT 1679 Query 4059 CAGACCACATGTTTGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACATGT 4118 |||| ||||||||| || ||| || ||| ||| |||| Sbjct 1680 CAGATCACATGTTTATT---------GACCTCAGCTTTGACTCGACCGACAATTAAATGT 1730 Query 4119 GATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAATATACTATTCTT 4170 |||||||||| ||| ||||||| |||||||||||||||||| |||||||||| Sbjct 1731 GATCTGAGACATTTCTTATTTTACTGGCCTACGTATGTAATCTACTATTCTT 1782 >seq3484 Length=4033909 Score = 141 bits (156), Expect = 3e-30 Identities = 156/214 (73%), Gaps = 20/214 (9%) Strand=Plus/Plus Query 3951 CCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCCACATTCCGGCTACGT 4010 |||||||||| |||||||| |||||||||| ||||||||||||| | ||||||| ||| Sbjct 105471 CCGGAAAGCGCCAACTTTCTGGCCGCTGCGTAAAACGAAGTTGCCGCTTTCCGGCACCGT 105530 Query 4011 CGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAGCCTCAGACCACATGT 4070 || | | |||| ||| ||| |||| |||||| ||||| ||||||||||| ||| ||| Sbjct 105531 CGAGGAACAAAACAGTATACGCACCTGGGCCAGTAAAAAAGAAAGCCTCAGATCACCTGT 105590 Query 4071 TTGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACATGTGATCTGAGACTT 4130 || || ||| || ||| ||||||||| ||||||| | Sbjct 105591 TTATT--------------------GACTTCGACCGACAATTACATGTGTTCTGAGAGAT 105630 Query 4131 TTGTTATTTTTCTGGCCTACGTATGTAATATACT 4164 || ||||||| |||| ||| ||||||||| |||| Sbjct 105631 TTATTATTTTACTGGTCTAGGTATGTAATCTACT 105664 >seq2387 Length=144888 Score = 138 bits (152), Expect = 4e-29 Identities = 169/235 (72%), Gaps = 11/235 (5%) Strand=Plus/Minus Query 3936 TTTTCTGCCCTCCATCCGGAAAGCGGCAACTTTCGGGCCGCTGCGCTAAACGAAGTTGCC 3995 |||| ||||||||| ||| || || |||| ||||||||||| ||||||| || || Sbjct 139855 TTTTGTGCCCTCCAGTTGGATTGCTTAAAGTTTCTGGCCGCTGCGCGAAACGAACTTACC 139796 Query 3996 ACATTCCGGCTACGTCGGGTAGAAAAATAGTGTACATACCTCGGCCAGAAAAAAGTAAAG 4055 | ||||||| ||||| | | | || || | |||| |||| || | | |||||| |||| Sbjct 139795 GCTTTCCGGCACCGTCGAGCAAACAAGTAATATACACACCT-GGGCTGTAAAAAG-AAAG 139738 Query 4056 CCTCAGACCACATGTTTGTTTGGNNNNNNNNNNNNNNNNNNNNNTCGGCCAACAGTTACA 4115 ||||||| ||||||||| || ||| || ||| ||| | Sbjct 139737 CCTCAGATCACATGTTTATT---------GACCTCAGCTTTGACTCGACCGACAATTAAA 139687 Query 4116 TGTGATCTGAGACTTTTGTTATTTTTCTGGCCTACGTATGTAATATACTATTCTT 4170 ||||||||||||| ||| ||||||| |||||||| ||||||||| |||||||||| Sbjct 139686 TGTGATCTGAGACATTTCTTATTTTACTGGCCTANGTATGTAATCTACTATTCTT 139632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17583055299600