Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20giraulti_20[genbank_20GCA_5F000004775.1_202010-01-15] 4,912 sequences; 283,606,953 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2005 116 3e-21 seq3620 87.8 2e-12 >seq2005 Length=1592806 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||||| || | ||||| || || || ||||||||| ||||| ||||| | | Sbjct 905043 CCTCCTCTTAGACGCAGGACCAAGTGAAGAGTAGACTCTTTTTGAATATTGTAATCAGAA 904984 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||||||||| ||||| ||||||||||| ||||| | || Sbjct 904983 AGAGTACGTCCATCTTCCAGCTGTTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGAGGA 904924 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| ||| || ||||| | | | || || | || || Sbjct 904923 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTTTCAATTGTGTCTGAAGCTTCAACC 904864 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | ||||| |||| |||||||||||||||||||| Sbjct 904863 TCCAGGGTAATGGTCTTTCCAGTCAATGTTTTAACAAAGATTTGCAT 904817 Score = 105 bits (116), Expect = 6e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| || || | ||| || || ||| || || ||||| || || | | Sbjct 904815 CCTCCACGGAGGCGCAAGACTAGATGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGAA 904756 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || | ||||| || ||||| |||||||||||||| || | || Sbjct 904755 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGA 904696 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| |||||| ||||| | | | || || | |||||| Sbjct 904695 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATGGTGTCTGAGGCCTCCACT 904636 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCGA 39295 |||| ||||| |||| || |||| ||||| |||||||| |||||||| | || || Sbjct 904635 TCCAGAGTGATGGTTTTGCCAGTCAAGGTTTTCACAAAGATCTGCATCTTGAAGCTGA 904578 Score = 104 bits (114), Expect = 2e-17 Identities = 170/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| | | || | || | ||| ||||| ||||| | Sbjct 905286 ACAAAAATTTG--CATGCCTCCACGAAGTCGGAGAACAAGATGGAGCGTTGATTCTTTCT 905229 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||| | ||| |||| | |||| |||||||| ||||| ||||| || |||| Sbjct 905228 GGATGTTGTAATCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCAGCAAAAATCAGAC 905169 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||||||| | || | | |||||||||| |||||| |||| | | | | Sbjct 905168 GCTGCTGGTCTGGAGGGATACCCTCTTTGTCCTGGATTTTGGCCTTGACATTTTCAATTG 905109 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || | || || |||| ||||| | ||||| |||| || || |||||||||| Sbjct 905108 TGTCTGAAGCTTCAACCTCCAAGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATTT 905049 Query 39281 GCAT 39284 |||| Sbjct 905048 GCAT 905045 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | |||| ||| |||||| ||||||||| || || || || | | Sbjct 906183 CCTCCTCTCAGACGAAGTACCAGATGGAGCGTGGACTCTTTTTGAATGTTGTAGTCTGAA 906124 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || | | | || || |||||||| || ||||| || |||||||||||||| |||||| Sbjct 906123 AGGGTCCTTCCATCCTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGTGGG 906064 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || || || ||| ||||| ||||| | | | || ||| | || || Sbjct 906063 -ATGCCTTCCTTATCCTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGCTTCAAC 906005 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || |||| || || | ||||| || || |||||||| Sbjct 906004 TTCTAAGGTTATGGTTTTACCGGTTAAGGTTTTGACGAAAATTTGCAT 905957 >seq3620 Length=288302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 39066 TAAG-CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTC 39124 |||| ||||| ||||| || || || |||||||| ||||| || |||| || || | Sbjct 91851 TAAGACGTAAGACCAAGTGGAGTGTAGATTCTTTTTGAATATTGTAGTCGGAGAGCGTAC 91792 Query 39125 GTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCT 39184 | | || || | ||||| || ||||| || | |||||||||||| | || | | || Sbjct 91791 GACCATCTTCCAATTGTTTTCCGGCAAAGATTAAACGCTGCTGGTCTGGAGGGATTCCCT 91732 Query 39185 CTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCG 39244 |||||||| |||||| |||| | | | |||||| | ||| || || | | Sbjct 91731 CTTTGTCCTGGATTTTAGCCTTGACATTTTCGATCGTATCAGAGGCCTCGACTTCAAGTG 91672 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| || |||| || || || ||||| ||||| Sbjct 91671 TGATGGTTTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 91632 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| |||||| ||||||||||| ||||| || | | ||| || | Sbjct 90022 CGCAATACCAAATGCAGCGTGGATTCTTTTTGTATGTTATAGTCTGACAATGTGCGCCCA 89963 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || | ||||| || || || || | | ||||||||| |||||| | | |||||| Sbjct 89962 TCCTCTAATTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG-ATTCCCTCTTT 89904 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||||| || | | | | ||| ||| | ||| || || | ||||| Sbjct 89903 GTCCTGAATTTTAGCCTTCACATTTTCGATCGTGTCGGAAGCCTCGACTTCAAGTGTGAT 89844 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| || || ||||| ||||| ||||| Sbjct 89843 GGTTTTACCCGTGAGTGTCTTAACGAAGATCTGCAT 89808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429519885252656