Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 203 4e-47 seq14 114 2e-20 seq410 89.7 6e-13 >seq1 Length=33571687 Score = 203 bits (224), Expect = 4e-47 Identities = 320/456 (70%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||| || ||||||||||||| |||||||||||||||| |||||||| || | Sbjct 24628368 TCAAATTCCTCTCCCCAAACATCAGGTAATCCAGGACATTCATGTGGACACATTAAACTC 24628427 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 |||| | ||| || |||| ||||| || | || || ||||| | ||| ||| || Sbjct 24628428 CACTTTGTGTCCTCAAGAACTCTCTTCATGAACAAGTCCGGGATCCATAAAGC-ATAGAA 24628486 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || ||||| | ||| | ||| || || ||||| |||||||| |||||||| || | | Sbjct 24628487 AAGGTCTCTCGCTCTGTTTTCTTCTTTACCTGTGTTCTTTTTGAGATCGAGAAATTCGAA 24628546 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 || |||| ||||||||||||||| || |||| | ||||||| | |||||||| || Sbjct 24628547 GATGTCAGCATGCCACGGTTCCAAATACATGGCAAACGCTCCAGGTCTCTTGTTTCCACC 24628606 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||||| | ||| | || |||||||| || ||||| | ||| |||| | |||||| || Sbjct 24628607 TTGATCGACGTAACGCGCAGTGTTATTGTATACTCTAATCATAGGAACTAAACCATTAGA 24628666 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 | |||| || || || || || | ||| |||| | ||| | || | ||| Sbjct 24628667 TACACCGTTTGTGCCAGAAATTCGAGTACCAGTGGCTCTTATAGTGTGAACACTCAAACC 24628726 Query 54310 TATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 54369 || || || || ||| || ||| || |||| || | |||||||| || || || Sbjct 24628727 AATGCCACCAGCAGATTTGCTGACTAAAGCACATCTCTTCAGTGTATCATAAATTCCTTC 24628786 Query 54370 TATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || || |||| |||| || ||||| || Sbjct 24628787 AATACTGTCTTCAGTCATTGTAAGAAGGAAACAACT 24628822 Score = 143 bits (158), Expect = 3e-29 Identities = 268/391 (69%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 52922 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 52981 ||||| || | ||| | ||| ||| ||||| |||||||| || | || ||||||||| Sbjct 24627100 GCTATGTGTACATTTAGAGACTGAGACTGATCAATGAAGGCACCTCGATCCGCAGCCATT 24627159 Query 52982 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 53041 || | || |||||||| | ||| ||||| | ||||| || | | ||| | || || Sbjct 24627160 TTCAAAATGGTCTTTTGCGAAATCTCCCAGACTGTTTTGTACAGTTTCTTCAATTCATCA 24627219 Query 53042 GGAAGGTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCA 53098 |||| ||| | ||||||| || || | | | || || |||||| ||||| Sbjct 24627220 GGAATCCTTGCAACGTTCTGAACCGAACCGTTGTTTGCGATTATTTCATTCTTCATCTCC 24627279 Query 53099 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 53158 || | ||| | | || || || || || | | | ||| ||||| || || || ||| Sbjct 24627280 TCGTCCCACAGATCCCTGTCTGTCAAGTCTTTCAACAAATGAGGATTGACGACCTGGAAT 24627339 Query 53159 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 53218 |||||||| | || | || |||||||| || || || || || || | || || || Sbjct 24627340 TCTCCAGAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTG 24627399 Query 53219 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 53278 || ||||||||||| || || || || || ||||| || || | || ||| ||| | | Sbjct 24627400 TTGCCCAAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAAAGAATTGCGA 24627459 Query 53279 AGACCGTATGTTCTG--ATTTTATCTTTTAG 53307 | ||| |||||||| |||||| |||| || Sbjct 24627460 ACACC--ATGTTCTGCAATTTTAGCTTTCAG 24627488 Score = 104 bits (114), Expect = 3e-17 Identities = 230/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 53549 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 53608 ||||| || || || || ||| | || || |||| |||||||| || || || ||||| Sbjct 24627886 ATACCAATGGGCCTGTGCCTCGTGTTGGACCTTTCTGCTTCTGGGATGGGGTAGTAATTT 24627945 Query 53609 ATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 53668 | || |||||||||| | ||||| | ||||| | || ||||| ||||| | Sbjct 24627946 AGGTCAATAATTTTATCCAAATTTCTTGTTGTGACTTTTGCGACTTCCTTAAGTTTTGCA 24628005 Query 53669 AAATCAAA-----TTGTCCATCTATT-ACAAACATGTTCAATGCAATAGATGCCAGATTA 53722 ||||| | || | | |||| |||||||| || | ||||||||||| | ||| Sbjct 24628006 AAATCGTACGTTTTTTTACTGGTATTTACAAACATATTAACGGCAATAGATGCTAAATTG 24628065 Query 53723 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 53782 || |||||||| || | | | | ||| || | | || ||||| | |||||| | Sbjct 24628066 CACACGGCTACTTCGTCTGGAGAAGAATACTGCACAACTTCCGTGCATAAATTACTGCTT 24628125 Query 53783 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 53842 |||| || || | ||||||||||| || ||||| ||| || || | ||| Sbjct 24628126 CTGATAGTACCAAGGTTTTGTTGATTGGATTTGCGATTACAGTGATCTTTGTATAACATG 24628185 Query 53843 AATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 | || || |||||||||| || || || |||||| |||| Sbjct 24628186 TAAGGGGTTCCAGTTTCAACTTGAGACATTAAAATCGCAGTCCA 24628229 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 || |||| ||| || ||||||||||||| ||| ||||| |||||||| || ||||||||| Sbjct 24629345 CTGAATACTTTCTTGGTTTCTTTGTGTAAATTGGATACTGCTATTCTGGCTGCTAGAATG 24629404 Query 54830 GCATAATCCG 54839 |||||||||| Sbjct 24629405 GCATAATCCG 24629414 >seq14 Length=421909 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 || || || ||||||| ||| | ||||||| |||||| | | | | ||| |||||| Sbjct 277594 TTTTTCATTTCATCATCCCAAAGATTTCTCTTTGTTAAATCATTTAATAAATGTGGATTA 277535 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | |||||||| ||||| || | | ||||||||||||||| || || || ||| Sbjct 277534 ACAATAATGAATTCTCCTGACAAAACACGTCTAGTGTAAATATTACTTGTGTAAGGCTCC 277475 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 || || ||||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 277474 ACTGATTCATTGTTTCCCAATATCTGAGCTGTAGAAGCTGTTGGCATTGGTGC 277422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/296 (67%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656 ||||||| ||| | ||| |||||||||| | || | ||| ||| || || || Sbjct 276917 GGATAATGATTCAGATCAATAATTTTATCTAAATTCTTAGCAACAGTTTTAACAACTTCT 276858 Query 53657 TTCAGTTTGAGAAAATCAAATTG------TCCATCTATTACAAACATGTTCAATGCAATA 53710 |||| ||| ||||||| | | | || | |||||||| || | ||||| Sbjct 276857 TTCAATTTTAGAAAATTGTAGTACTGTGTTTCAACATCAACAAACATATTAACAGCAATG 276798 Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 ||||| | |||||| || ||||| || || | | | |||||||| || |||||||| Sbjct 276797 GATGCTAAATTACACACTGCTACTTCGTTTGGAGAAGAGTATTGTATAATTTCAGTGCAT 276738 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 | |||||| | || || ||||| | |||||||||||| || || || ||| Sbjct 276737 AAATTACTGCTTTTAATAGTTCCAAGATTTTGTTGATTTGATTTACGATTGCAGTGATCT 276678 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 ||||| || || | || || |||||||||| || | || || ||| || |||| Sbjct 276677 TTATAGAGCATATAAGGAGTTCCAGTTTCAACTTGTGCTTTTAAAATGGCAGTCCA 276622 Score = 86.0 bits (94), Expect = 7e-12 Identities = 211/316 (67%), Gaps = 12/316 (4%) Strand=Plus/Minus Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||| ||||| | ||| ||||| | | |||||| | |||||| || || | || | | Sbjct 276223 TATTTTTTTTTAAATCAAGGAATTCAAAAATATCTGCATGCCAGGGCTCTAGATAAAGAG 276164 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | ||||||| ||||||||| || ||||| || | | | || || || | | Sbjct 276163 CAAATGCACCAGGCCTTTTGTTTCCACCTTGATCAATAAAGCGTACTGTATTGTTGAATA 276104 Query 54222 CTCTCAACATTGGAA-TAATACCATTGG---ATGCACCATTGGTCCCGGAGATATAGC-- 54275 |||| | ||| || | |||| ||||| | || || |||| | || || || Sbjct 276103 CTCTGATCATAGGTACTAAT-CCATTTGCAAATCCATTATTGCT-----AGCAATCGCAG 276050 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 |||| | || | ||||||| || || ||| || || ||||| ||| || | Sbjct 276049 TTCCTTTAGCTCTAATATTATGAACACTTATACCAATACCACCTGCGGATTTGCTAATAA 275990 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 ||| |||| ||||| || || | || || ||||||||||| || |||||| |||| | Sbjct 275989 TTGCACATCTCTTTAATGTTTCGAAAATTCCTTCTATACTATCTTCAATCATGGTAAGAA 275930 Query 54396 GAAAACAGCTAGACAT 54411 |||||| ||| |||| Sbjct 275929 TAAAACAACTAAACAT 275914 >seq410 Length=4553683 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || || ||||| | ||| |||||||| || ||||||||||||||||||| || || Sbjct 2615951 TAGGTGTCAATGAGAAGGGAGTACATTTCAGAGTGAATGTTTTCAATGGCCACCTGGAAG 2615892 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 || ||||| || | |||||| || | ||| ||||| | || || || | | ||| Sbjct 2615891 CCATAGAAGCAGCGAGCCTCAGTCACCTGCACTTCCTGGCTGAAACGCTCAACCAGATTC 2615832 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 24568 ||||| || || || || ||| ||||| || ||||| ||||| Sbjct 2615831 TCATTGACAATACCATCCGAGGCAGCAAAGAATGCCAAAACATG 2615788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593676343571040