Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq335 172 8e-38 seq337 168 1e-36 seq796 132 7e-26 seq158 127 3e-24 seq236 91.5 2e-13 >seq335 Length=1594555 Score = 172 bits (190), Expect = 8e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| ||||||| || || || ||||| || ||| | ||| |||||||| Sbjct 905587 ATGCAAATTTTTGTAAAGACTCTGACTGGTAAAACCATCACTCTGGAGGTTGAAGCATCA 905646 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||||| ||||| ||||||||||| ||||| |||||| Sbjct 905647 GATACCATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 905706 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || ||||| |||||||| ||| | || ||| | ||||| || |||||| ||| Sbjct 905707 CAGCGTCTGATTTTCGCAGGAAAGCAACTGGAAGATGGAAGAACACTATCAGATTACAAT 905766 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||||||| | ||| | ||| | ||| | ||||| || || ||| || Sbjct 905767 ATCCAAAAAGAATCAACTCTCCATCTTGTTCTTCGTCTTCGAGGAGGCATGCAAATTT 905824 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || |||||||| || ||| | || | || || Sbjct 904903 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAAACCATCACTCTGGAAGTGGAGGCCTCA 904962 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| || || ||||| || || || || ||||| Sbjct 904963 GACACCATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCTCCAGATCAG 905022 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||| ||||| || ||||||||||| ||| | || || | || || ||| Sbjct 905023 CAGCGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGACTACAAT 905082 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || |||||| | || ||||| | ||| || |||| || || Sbjct 905083 ATTCAGAAGGAGTCAACTCTTCACTTGGTCCTGCGTCTAAGAGGAGGAAT 905132 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/241 (70%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || || || || ||| | || | || || | Sbjct 905815 ATGCAAATTTTTGTCAAAACTTTGACTGGAAAGACCATTACTTTGGAAGTAGAGGCTTCT 905874 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| || |||||||| |||||||| || || ||||| ||| Sbjct 905875 GATACTATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCAA 905934 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGA-GGATAGTCGAA-CATTAGAAGATTATA 124716 ||| | || || ||||| || |||||| | || |||| | ||| | | ||||| | Sbjct 905935 CAACGTCTCATATTTGCTGGTAAACAACTGGAAGGATGGCAGAAACCCTGTCTGATTACA 905994 Query 124717 ATATTC-AAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 | || | ||||||||||||| | ||| | ||| | ||| | |||||||| || ||| | Sbjct 905995 ACATCCCAAAAAGAATCAACACTCCATCTTGTTCTTCGTCTTCGAGGTGGAATGCAAATT 906054 Query 124776 T 124776 | Sbjct 906055 T 906055 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTAT-AAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 ||||||||| || | ||| || || || || || || || ||| | || | || || Sbjct 906045 AATGCAAATTTTCGTCAAAAACTCTGACTGGTAAGACCATTACTCTGGAAGTAGAGGCCT 906104 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| | ||| |||||||| || |||||||| || || || || | Sbjct 906105 CCGACACCATTGAAAATGTTAAAGCCAAAATTCAGGACAAAGAAGGAATTCCTCCAGACC 906164 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || | ||||| ||||| || ||||||||||| || | || ||| | || || | Sbjct 906165 AGCAGCGTCTTATCTTTGCTGGTAAACAATTAGAAGACGGGCGTACACTTTCTGACTACA 906224 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| || || |||||| | ||| | ||| | ||| | |||||||| || Sbjct 906225 ACATTCAGAAGGAGTCAACTCTTCATCTCGTTCTCCGTCTTCGAGGTGGAAT 906276 >seq337 Length=921547 Score = 168 bits (186), Expect = 1e-36 Identities = 375/554 (68%), Gaps = 9/554 (2%) Strand=Plus/Plus Query 203114 TGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTCA 203173 |||| ||||| |||| | | ||||| | || ||| || || | | |||| || | |||| Sbjct 71188 TGTTGATTTAAAGTTTCTCTGGCCCAGTCATAAGCTCCCTTAAGACTATCATAGTGTTCA 71247 Query 203174 TTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAACT 203233 ||||| ||||||||||||||| |||||| | || | || |||||||| ||| | Sbjct 71248 TTATAGAAACAAAAATTATCACTAAGTTCTCTGCGCACTATGGCTTCTTCCATGAAAGCC 71307 Query 203234 TCTACCGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAATATTATTCTTTGAGTT 203293 || || || ||| || |||||||||| || |||||| || |||||| Sbjct 71308 TCAACTGACTTATTGTACTGACTTTTATATTTTTTCGCTTCTAAAATACACCTTTGAACA 71367 Query 203294 GAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTTGGATCA 203353 ||||| |||||||| | ||| || ||||| ||||| | ||||| | |||||| | Sbjct 71368 GAAATCATGCCAAAATGAAACCAAGGGGATAAGTTACTCAAAGCATTGAAAATTGGATTA 71427 Query 203354 TTTCtttttttagcataatcttttaatctattttgtataaatatatctaatattttaaat 203413 ||||| |||| | ||||| | | | || ||| | |||| |||| || | || Sbjct 71428 TTTCTCTTTTCATCATAAATTCTCAGCCTTATTTTAAGAAATTTATCCAA-CTCAGCTAT 71486 Query 203414 gcatattttGTA-CCAGATTTTGCCCAAGAAACAGGTTTAACATTTCTATCAATATTTA- 203471 | |||||| || | ||||||||| | || | ||| | |||| | | | Sbjct 71487 ACCACCTTTGTATCCTGCTTTTGCCCATGTAATTTTATCAACTGATTTATCGACAAGCAC 71546 Query 203472 ATGATTGTTCTGCttttttccaattattatttattttaatatatgt---at-tataagta 203527 || | | |||| | | |||||| | ||||| | | | || || ||| | | Sbjct 71547 ATCA-TCCAATGCTGTATCCCAATTGAT-TTTATCAAACTTTTGGTCAGATGTATGTGGA 71604 Query 203528 tgtttaataataggtataaattCAGTTAAATATTCTGATAATTTATAATTTATTTTATTT 203587 || || |||| |||| ||||| |||||| | || || ||| | |||||||||||| Sbjct 71605 TGCTTTATAACAGGTGGGAATTCTGTTAAAAACTCATCTAGCTTAGAGTTTATTTTATTT 71664 Query 203588 CTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTACAATATTA 203647 |||||||| ||| | ||| |||||||| | | |||| ||||||||| ||||||||| Sbjct 71665 CTAATGGTACGTGCTGCATACTCTAATTTTTCAGATGCAACCCAACATGGAACAATATTA 71724 Query 203648 TGTGAATCAACTTG 203661 |||| |||||| || Sbjct 71725 TGTGCATCAACCTG 71738 Score = 163 bits (180), Expect = 4e-35 Identities = 184/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || ||||||||||| |||||||||||||| ||| ||| |||||||| | || Sbjct 70857 CCTACATATCCATTCGGATCACGTCCATCCATACTATACTTATCATTCAGATAAATTGAC 70916 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 || || || ||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 70917 CACTTTAAGGCATCATCTGGTGTTTCAGTCCATTCTAAAATTTTTTTAGCCCAATACATT 70976 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 || | | |||| || ||||| || | | | | |||| ||| | ||||||||| ||| Sbjct 70977 CTAAGAAATCCGTGGATTTTTCCTTCCTTTACTAATTGTATTTCAGCTGCATTCCACAAA 71036 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107 | |||||||||||| ||||||| | || | || |||| |||| | ||| ||||| Sbjct 71037 TCATCATGAGTTAATCCATTTTCCAATTCGTTCAATGTATAAATATAGTCTCTTTTATCA 71096 Query 203108 TTTTTATGTTC 203118 ||| ||| ||| Sbjct 71097 TTTCTATTTTC 71107 Score = 93.3 bits (102), Expect = 6e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819 ||||||||||| | | ||| || | |||| |||| || | |||||||||||||| || Sbjct 70653 ACATCAAATTTTCTTTCACAACCCTTATAATTCATGTAACGAATTTTACCAAATACAGGC 70712 Query 202820 CTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATA 202875 |||||| |||| || |||||| | |||||| ||||||||||| || || | ||| Sbjct 70713 CTTTCTCTCCAGCCTTGATCATGTACACCACATATTGACCACATGCAGCCTAAATA 70768 >seq796 Length=23603 Score = 132 bits (146), Expect = 7e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| ||| | || || | |||||||| || |||||| ||||| | ||||| Sbjct 4857 ACAATGCAAATTTTTGTCAAAACTTTGACAGGCAAGACCATAACTTTAGAGGTCGAAGCT 4798 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| || ||| | ||| ||||| |||||||| |||||||| || || ||| Sbjct 4797 TCAGATACTATAGAAAATGTTAAAGCTAAAATCCAAGATAAGGAAGGTATTCCTCCAGAT 4738 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||| | | |||||||| || ||||| ||||||||| |||||||||| ||||| Sbjct 4737 CAACAGCGATTGATTTTTGCTGGCAAACAGTTAGAGGATGGTCGAACATTGTCCGATTAC 4678 Query 124716 AATATTCAAAAAG 124728 || || || |||| Sbjct 4677 AACATACAGAAAG 4665 >seq158 Length=288468 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || ||| | || | ||||| | Sbjct 89649 ATGCAAATTTTTGTTAAGACGCTTACTGGCAAAACAATTACTCTGGAAGTCGAAGCTTCT 89708 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || ||||||||||| ||||||||||| || || ||||| Sbjct 89709 GATACGATTGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGATCAG 89768 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || || ||| | || ||| | || ||||| || || || Sbjct 89769 CAGAGGCTGATTTTTGCTGGTAAGCAACTCGAAGATGGACGCACATTGTCTGACTACAAC 89828 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || | || | || | || | || |||||||| Sbjct 89829 ATTCAAAAGGAATCCACACTTCACCTTGTACTTCGACTTCGCGGTGGTAT 89878 Score = 123 bits (136), Expect = 4e-23 Identities = 175/245 (71%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||||| || || ||||| || || | || | || || Sbjct 89877 ATGCAGATCTTCGTTAAGACACTCACGGGTAAAACCATCACACTTGAAGTCGAGGCTTCC 89936 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || |||||||| || ||||| || || ||||| || || Sbjct 89937 GACACGATCGAAAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATCCCACCAGACCAG 89996 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || |||||||||||||||||| |||| ||||| ||| ||||| Sbjct 89997 CAGAGGTTGATCTTCGCTGGAAAACAATTAGAGGATGGTCGCACATTGTCAGACTATAAC 90056 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 |||||||||||||| || ||||| |||| || || | || || ||||| ||| ||| Sbjct 90057 ATTCAAAAAGAATCCACGCTGCATCTGGTATTGCGACTTCGTGGAGGTATGCAAATCTTC 90116 Query 124778 ATAAA 124782 |||| Sbjct 90117 GTAAA 90121 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || ||||| || || || | ||| |||| || | Sbjct 89421 ATGCAGATCTTTGTTAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTTGAGGCTTCT 89480 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || |||||||| ||||| || || || || || || Sbjct 89481 GACACTATTGAGAATGTCAAGGCCAAGATTCAAGACAAAGAGGGCATTCCCCCAGACCAG 89540 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || || || || || | |||||| | || || | || || ||| Sbjct 89541 CAGAGGTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGACGTACTCTGTCCGACTACAAT 89600 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| || | || ||||| || ||||| |||| || || ||| || Sbjct 89601 ATTCAAAAAGAATCTACACTTCACTTGGTCTTGCGTTTGAGAGGAGGCATGCAAATTT 89658 >seq236 Length=27037145 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 205435 TTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAAT 205494 || ||||| |||| ||| |||||||| | || | ||| |||| |||| || ||| Sbjct 26891222 TTCAAATTCGTTATATGGGCAATCATGCATGTGAGCAAAGAATAAGAGGCAATGTTGAAT 26891163 Query 205495 GGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTAT-T 205553 || || || | ||||||||||| ||||||||||| |||| |||||| | | Sbjct 26891162 GGGACTCCAAGTCCCATATCAGCACTTCTTTGATACAGCTGAC----AAGATAACTCTCC 26891107 Query 205554 ATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATC 205613 || | |||| |||||| || | | ||||||||| || | | |||| | || ||| Sbjct 26891106 ATCAGCTACACAAAATTGCACCAGAGCATGACAAGGAGGAAGAGCCATTATAGGAATATC 26891047 Query 205614 TATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatt 205673 || ||||||||||| | |||||| || || ||||| ||||||||||| || Sbjct 26891046 TACTGGATTCCAGGCGCACATTATTATTCGTCGGTCATCCGGTTTGTTTTTTATTTTGTT 26890987 Query 205674 tat 205676 || Sbjct 26890986 AAT 26890984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755398415366400