Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28]
6,098 sequences; 295,780,872 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq236 95.1 2e-14
seq796 93.3 6e-14
seq158 93.3 6e-14
seq335 89.7 8e-13
>seq236
Length=27037145
Score = 95.1 bits (104), Expect = 2e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 24027 AACATAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTC 24086
|||||| |||||||| ||||||||| || || | |||||||| ||||||| | |||
Sbjct 2270953 AACATATCCACATTTAGGAAACCATCTAGCATGCTCTATCCAAGCATCATCGGTTTCTTC 2271012
Query 24087 CCATTTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATC 24131
||| || |||| ||||||||||||| ||| ||| |||||| |||
Sbjct 2271013 CCAATTTCTTAAGCCACCATCACAATGAAAACATCTAACTTGATC 2271057
>seq796
Length=23603
Score = 93.3 bits (102), Expect = 6e-14
Identities = 126/184 (68%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 146095 TATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCT 146154
||| || ||||| || | |||| | ||| ||||| ||||| ||||||||||||||||
Sbjct 4672 TATGTTGTAATCGGACAATGTTCGACCATCCTCTAACTGTTTGCCAGCAAAAATCAATCG 4731
Query 146155 TTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGT 146214
|| ||||| |||||||| ||||| |||||||| |||
Sbjct 4732 CTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGCTTTAACATTTTCTATAGT 4791
Query 146215 ATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTG 146274
||||||| ||| || |||| || || || || ||||| || ||||| | || |||||
Sbjct 4792 ATCTGAAGCTTCGACCTCTAAAGTTATGGTCTTGCCTGTCAAAGTTTTGACAAAAATTTG 4851
Query 146275 CATT 146278
||||
Sbjct 4852 CATT 4855
>seq158
Length=288468
Score = 93.3 bits (102), Expect = 6e-14
Identities = 152/227 (67%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || | ||||| ||||||| ||| | || |||||||| || ||||| |||||
Sbjct 90103 CCTCCACGAAGTCGCAATACCAGATGCAGCGTGGATTCTTTTTGAATGTTATAGTCTGAC 90044
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | | ||| ||||||||||||||||| || ||||| || ||||| || || ||
Sbjct 90043 AATGTGCGACCATCCTCTAATTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 89984
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
||||| ||||| || || || || ||| || |||
Sbjct 89983 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCGATCGTGTCGGAAGCCTCGACT 89924
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| |||||||| |||||||| || | ||| |||| ||| || |||||
Sbjct 89923 TCAAGTGTGATGGTTTTACCCGTGAGTGTCTTAACGAAGATCTGCAT 89877
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| | | |||| ||| | ||||||||||| |||||||| || ||
Sbjct 89419 CCTCCTCTAAGACGAAGAACCAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCGGAC 89360
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||| | | ||| || | || || ||||| || ||||| || ||||| || || |||
Sbjct 89359 AGAGTACGTCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 89300
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||||||||||||
Sbjct 89299 ATGCCTTCTTTATCTTG 89283
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || | ||||| | |||||| || | |||||| ||||| || || ||||| ||
Sbjct 90331 CCTCCACGAAGTCGAAGTACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCGGAC 90272
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| || | ||| ||||||||||| || || | |||||||| || |||
Sbjct 90271 AAAGTTCGCCCATCCTCGAGTTGCTTTCCAGCAAAGATTAAACGCTGCTGATCTGGGGGA 90212
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 90211 ATACCTTCCTTGTCTTG 90195
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| ||||| | ||| ||||| || | ||| || ||||| ||||| || || |
Sbjct 91929 TTCCACCCCTAAGACGTAAGACCAAGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCGG 91870
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| || || | | ||| || ||||||||||| ||||| || || | ||||| || || |
Sbjct 91869 AGAGCGTACGACCATCTTCCAATTGTTTTCCGGCAAAGATTAAACGCTGCTGGTCTGGCG 91810
Query 146169 GAATTCCTTCTTTATCTTG 146187
| ||||| ||||| || ||
Sbjct 91809 GGATTCCCTCTTTGTCCTG 91791
>seq335
Length=1594555
Score = 89.7 bits (98), Expect = 8e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| ||||| || | | ||||| || | ||| || || || ||||| || || |
Sbjct 905131 TTCCTCCTCTTAGACGCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAG 905072
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||||||| | | ||| ||||||||||| |||||||| || | | |||||||| ||||
Sbjct 905071 AAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAG 905012
Query 146169 GAATTCCTTCTTTATCTTG 146187
||||||| ||||| || ||
Sbjct 905011 GAATTCCCTCTTTGTCCTG 904993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743469724700160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |