Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq236 95.1 2e-14 seq796 93.3 6e-14 seq158 93.3 6e-14 seq335 89.7 8e-13 >seq236 Length=27037145 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 24027 AACATAATCACATTTATCAAACCATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTC 24086 |||||| |||||||| ||||||||| || || | |||||||| ||||||| | ||| Sbjct 2270953 AACATATCCACATTTAGGAAACCATCTAGCATGCTCTATCCAAGCATCATCGGTTTCTTC 2271012 Query 24087 CCATTTATTTAAACCACCATCACAATAAAAGCATTTAACTTTATC 24131 ||| || |||| ||||||||||||| ||| ||| |||||| ||| Sbjct 2271013 CCAATTTCTTAAGCCACCATCACAATGAAAACATCTAACTTGATC 2271057 >seq796 Length=23603 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/184 (68%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 146095 TATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCT 146154 ||| || ||||| || | |||| | ||| ||||| ||||| |||||||||||||||| Sbjct 4672 TATGTTGTAATCGGACAATGTTCGACCATCCTCTAACTGTTTGCCAGCAAAAATCAATCG 4731 Query 146155 TTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGT 146214 || ||||| |||||||| ||||| |||||||| ||| Sbjct 4732 CTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGCTTTAACATTTTCTATAGT 4791 Query 146215 ATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTG 146274 ||||||| ||| || |||| || || || || ||||| || ||||| | || ||||| Sbjct 4792 ATCTGAAGCTTCGACCTCTAAAGTTATGGTCTTGCCTGTCAAAGTTTTGACAAAAATTTG 4851 Query 146275 CATT 146278 |||| Sbjct 4852 CATT 4855 >seq158 Length=288468 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| ||||||| ||| | || |||||||| || ||||| ||||| Sbjct 90103 CCTCCACGAAGTCGCAATACCAGATGCAGCGTGGATTCTTTTTGAATGTTATAGTCTGAC 90044 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct 90043 AATGTGCGACCATCCTCTAATTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGG 89984 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||| || || || || ||| || ||| Sbjct 89983 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCGATCGTGTCGGAAGCCTCGACT 89924 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||| |||||||| || | ||| |||| ||| || ||||| Sbjct 89923 TCAAGTGTGATGGTTTTACCCGTGAGTGTCTTAACGAAGATCTGCAT 89877 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| | | |||| ||| | ||||||||||| |||||||| || || Sbjct 89419 CCTCCTCTAAGACGAAGAACCAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCGGAC 89360 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | || || ||||| || ||||| || ||||| || || ||| Sbjct 89359 AGAGTACGTCCATCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 89300 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 89299 ATGCCTTCTTTATCTTG 89283 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | |||||| || | |||||| ||||| || || ||||| || Sbjct 90331 CCTCCACGAAGTCGAAGTACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCGGAC 90272 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| || | ||| ||||||||||| || || | |||||||| || ||| Sbjct 90271 AAAGTTCGCCCATCCTCGAGTTGCTTTCCAGCAAAGATTAAACGCTGCTGATCTGGGGGA 90212 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 90211 ATACCTTCCTTGTCTTG 90195 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| ||||| | ||| ||||| || | ||| || ||||| ||||| || || | Sbjct 91929 TTCCACCCCTAAGACGTAAGACCAAGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCGG 91870 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || ||||||||||| ||||| || || | ||||| || || | Sbjct 91869 AGAGCGTACGACCATCTTCCAATTGTTTTCCGGCAAAGATTAAACGCTGCTGGTCTGGCG 91810 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||| ||||| || || Sbjct 91809 GGATTCCCTCTTTGTCCTG 91791 >seq335 Length=1594555 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || | | ||||| || | ||| || || || ||||| || || | Sbjct 905131 TTCCTCCTCTTAGACGCAGGACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAG 905072 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| ||||||||||| |||||||| || | | |||||||| |||| Sbjct 905071 AAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAG 905012 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| ||||| || || Sbjct 905011 GAATTCCCTCTTTGTCCTG 904993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743469724700160