Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 188 9e-43 seq14 114 2e-20 seq410 100 4e-16 >seq1 Length=33571687 Score = 188 bits (208), Expect = 9e-43 Identities = 319/457 (70%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || || || ||||||||||||| |||| ||||||||||| |||||||| || | Sbjct 24628368 TCAAATTCCTCTCCCCAAACATCAGGTAATCCAGGACATTCATGTGGACACATTAAACTC 24628427 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63307 |||| | ||| || |||| ||||| || | || || ||||| | ||| ||| || Sbjct 24628428 CACTTTGTGTCCTCAAGAACTCTCTTCATGAACAAGTCCGGGATCCATAAAGC-ATAGAA 24628486 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || ||||| | ||| | ||| || || ||||| |||||||| |||||||| || | | Sbjct 24628487 AAGGTCTCTCGCTCTGTTTTCTTCTTTACCTGTGTTCTTTTTGAGATCGAGAAATTCGAA 24628546 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 || |||| ||||||||||||||| || ||||| | ||||||| | |||||||| || Sbjct 24628547 GATGTCAGCATGCCACGGTTCCAAATACATGGCAAACGCTCCAGGTCTCTTGTTTCCACC 24628606 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||| | ||| | || |||||||| || ||||| | ||| |||| | ||| || || Sbjct 24628607 TTGATCGACGTAACGCGCAGTGTTATTGTATACTCTAATCATAGGAACTAAACCATTAGA 24628666 Query 63488 TATACCATTGGTACCGGAGATATAGCCT-CCACTGGCACGAATATTACTAATTGATAGAC 63546 || ||| || || || || || | | | ||| |||| | ||| | || | || Sbjct 24628667 TACACCGTTTGTGCCAGAAAT-TCGAGTACCAGTGGCTCTTATAGTGTGAACACTCAAAC 24628725 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | || || || || ||| || ||| || |||| || | || ||||| || |||| Sbjct 24628726 CAATGCCACCAGCAGATTTGCTGACTAAAGCACATCTCTTCAGTGTATCATAAATTCCTT 24628785 Query 63607 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 | || || || || |||| |||| || ||||| || Sbjct 24628786 CAATACTGTCTTCAGTCATTGTAAGAAGGAAACAACT 24628822 Score = 149 bits (164), Expect = 8e-31 Identities = 269/391 (69%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 62160 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62219 ||||| || | ||| | ||| ||| ||||| |||||||| || | || ||||||||| Sbjct 24627100 GCTATGTGTACATTTAGAGACTGAGACTGATCAATGAAGGCACCTCGATCCGCAGCCATT 24627159 Query 62220 TTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62279 || | || |||||||| | ||| ||||| | ||||| || | | ||| | || || Sbjct 24627160 TTCAAAATGGTCTTTTGCGAAATCTCCCAGACTGTTTTGTACAGTTTCTTCAATTCATCA 24627219 Query 62280 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCA 62336 |||| ||| | ||||||| || || | | | || || |||||| ||||| Sbjct 24627220 GGAATCCTTGCAACGTTCTGAACCGAACCGTTGTTTGCGATTATTTCATTCTTCATCTCC 24627279 Query 62337 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAAT 62396 || | ||| | | || || || || || | | | ||| || || || || |||||| Sbjct 24627280 TCGTCCCACAGATCCCTGTCTGTCAAGTCTTTCAACAAATGAGGATTGACGACCTGGAAT 24627339 Query 62397 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA 62456 |||||||| | || | || |||||||| || || || || || || | ||| || || Sbjct 24627340 TCTCCAGAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTG 24627399 Query 62457 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62516 || ||||||||||| || || || || || ||||| || || | || ||| ||| | | Sbjct 24627400 TTGCCCAAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAAAGAATTGCGA 24627459 Query 62517 AGACCGTATGTTCTG--ATTTTATCTTTTAG 62545 | ||| |||||||| |||||| |||| || Sbjct 24627460 ACACC--ATGTTCTGCAATTTTAGCTTTCAG 24627488 Score = 120 bits (132), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || |||||||| ||||| ||| | || ||| | || || || ||||| ||||| Sbjct 24628894 CTCGACATTTGCTGACGTAAAGTACAAGCCGAAAAAAGCGTTGGCGATGCGTGGGTAAAA 24628953 Query 63702 CATTTTTCAGAAAG-TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 | ||||| | ||| ||||| ||||||||| || || | ||| || ||||| Sbjct 24628954 TAACGCTCAGACATATAG-TTGTAAGTCTCAATAACTTTCTCGAGATCATCTTTGTGAAT 24629012 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 |||| || || | ||| | ||||||||| || | |||||| | || || || || || Sbjct 24629013 AGCTACAGCAACTCTCATGAGCATGTGCTGTGGACGTTCAACTACCTTTTTATTGATCTT 24629072 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || ||| || | |||||||||| ||||| ||||| || |||||| ||| |||| || Sbjct 24629073 CATCAAATAACTTCTTTCCAAAGTCTTAAATCCAAAGTAATTGTATCCAAAATCTCTATC 24629132 Query 63881 GTAAATAATAACCGAATTGAGCTTATCCTT 63910 || || || | ||||| ||||||||||| Sbjct 24629133 ATAGATGATGGCAGAATTCAGCTTATCCTT 24629162 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 64008 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATG 64067 || |||| ||| || ||||| ||||||| ||| |||| ||||||||||| ||||||||| Sbjct 24629345 CTGAATACTTTCTTGGTTTCTTTGTGTAAATTGGATACTGCTATTCTGGCTGCTAGAATG 24629404 Query 64068 GCATAATCCG 64077 |||||||||| Sbjct 24629405 GCATAATCCG 24629414 >seq14 Length=421909 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 || || || ||||||| ||| | ||||||| |||||| | | | | ||| || ||| Sbjct 277594 TTTTTCATTTCATCATCCCAAAGATTTCTCTTTGTTAAATCATTTAATAAATGTGGATTA 277535 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | ||||||||| ||||| || | | ||||||||||||||| || || || ||| Sbjct 277534 ACAATAATGAATTCTCCTGACAAAACACGTCTAGTGTAAATATTACTTGTGTAAGGCTCC 277475 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 || || ||||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 277474 ACTGATTCATTGTTTCCCAATATCTGAGCTGTAGAAGCTGTTGGCATTGGTGC 277422 Score = 107 bits (118), Expect = 2e-18 Identities = 201/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||||| ||| | ||| |||||||||| | ||| | ||| ||| || || || Sbjct 276917 GGATAATGATTCAGATCAATAATTTTATCTAAATTCTTAGCAACAGTTTTAACAACTTCT 276858 Query 62895 TTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACATGTTCAATGCAACA 62948 |||| ||| ||||||| | | || | |||||||| || | |||| Sbjct 276857 TTCAATTTTAGAAAATTGTAGTACTGTGTTTCAACATCAACAAACATATTAACAGCAATG 276798 Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 ||||| | ||||||||| ||||| || || | | | |||||||| || |||||||| Sbjct 276797 GATGCTAAATTACACACTGCTACTTCGTTTGGAGAAGAGTATTGTATAATTTCAGTGCAT 276738 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 | |||||| | || |||||||| | |||||||||||| || || || ||| Sbjct 276737 AAATTACTGCTTTTAATAGTTCCAAGATTTTGTTGATTTGATTTACGATTGCAGTGATCT 276678 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 ||||| || || | ||||| |||||||||| || | || || ||| || |||| Sbjct 276677 TTATAGAGCATATAAGGAGTTCCAGTTTCAACTTGTGCTTTTAAAATGGCAGTCCA 276622 Score = 86.0 bits (94), Expect = 8e-12 Identities = 196/291 (67%), Gaps = 3/291 (1%) Strand=Plus/Minus Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGT 63697 || || |||||||| || | |||| | ||| ||| ||| |||||||| || || || Sbjct 275836 CACCTGGACATTTGTTGGTGTATAGTACATGCAAAAAAAAAGTGTAGGAGATGCATGTGT 275777 Query 63698 AAACCATTTTTCAGAAAGTAGA-TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 || | ||||||| ||| | || || ||||| || || || | |||| || || Sbjct 275776 GAAGTAACGTTCAGAA-GTATAATTATATGTCTCTATGACTTTTTCAAGATCCTCTTTAT 275718 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 ||| ||||||| || | ||| | ||| | || |||| ||||| | || || | Sbjct 275717 GAAGAGCTACTGCAACTCTCATAAGCATATCTTGTGGTCGCTCAACCACTTGTCCATTAA 275658 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 | | || ||||| ||| ||||| |||||||| ||||||||||| | ||| |||| Sbjct 275657 TCCTGAATAAGTAACTTTTCTCCAAGGTTTTAAATCCAAAATAGTTAAAGACAAAATCTC 275598 Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATAT 63927 || || || | ||||| || |||| |||| ||| | || ||||| Sbjct 275597 TGTCATAGTCTATGGCAGAATTTAGTCTATCTTTATGTTTTTGAATTATAT 275547 >seq410 Length=4553683 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| || ||||||||||||||||||| ||| || || ||||| || | |||||| Sbjct 2615930 TACATTTCAGAGTGAATGTTTTCAATGGCCACCTGGAAGCCATAGAAGCAGCGAGCCTCA 2615871 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 || | ||||||||| | || || || | | ||| ||||| || || ||||| | Sbjct 2615870 GTCACCTGCACTTCCTGGCTGAAACGCTCAACCAGATTCTCATTGACAATACCATCCGAG 2615811 Query 33993 GCTGCAAAAAACGCCAATACATG 34015 || ||||| || ||||| ||||| Sbjct 2615810 GCAGCAAAGAATGCCAAAACATG 2615788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629769592153440