Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq14 114 2e-20 seq410 89.7 7e-13 >seq1 Length=33571687 Score = 185 bits (204), Expect = 1e-41 Identities = 316/456 (69%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || || || ||||||||||||| |||||||||||||||| |||||||| || | Sbjct 24628368 TCAAATTCCTCTCCCCAAACATCAGGTAATCCAGGACATTCATGTGGACACATTAAACTC 24628427 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 66100 |||| | ||| || |||| ||||| || | || || ||||| | ||| ||| || Sbjct 24628428 CACTTTGTGTCCTCAAGAACTCTCTTCATGAACAAGTCCGGGATCCATAAAGC-ATAGAA 24628486 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | ||||| | ||| | ||| || || ||||| |||||||| |||||||| || | | Sbjct 24628487 AAGGTCTCTCGCTCTGTTTTCTTCTTTACCTGTGTTCTTTTTGAGATCGAGAAATTCGAA 24628546 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 || ||| ||||||||||||||| || ||||| | ||||||| | |||||||| || Sbjct 24628547 GATGTCAGCATGCCACGGTTCCAAATACATGGCAAACGCTCCAGGTCTCTTGTTTCCACC 24628606 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||||| | ||| | || |||||||| || ||||| | ||| |||| | |||||| || Sbjct 24628607 TTGATCGACGTAACGCGCAGTGTTATTGTATACTCTAATCATAGGAACTAAACCATTAGA 24628666 Query 66281 TGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACC 66340 | ||| || || || || || | ||| | || | ||| | || | ||| Sbjct 24628667 TACACCGTTTGTGCCAGAAATTCGAGTACCAGTGGCTCTTATAGTGTGAACACTCAAACC 24628726 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || || ||| || ||| || |||| || | |||||||| || || || Sbjct 24628727 AATGCCACCAGCAGATTTGCTGACTAAAGCACATCTCTTCAGTGTATCATAAATTCCTTC 24628786 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || || |||| |||| || ||||| || Sbjct 24628787 AATACTGTCTTCAGTCATTGTAAGAAGGAAACAACT 24628822 Score = 149 bits (164), Expect = 8e-31 Identities = 269/391 (69%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 64953 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 65012 ||||| || | ||| | ||| ||| ||||| |||||||| || | || ||||||||| Sbjct 24627100 GCTATGTGTACATTTAGAGACTGAGACTGATCAATGAAGGCACCTCGATCCGCAGCCATT 24627159 Query 65013 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 65072 || | || |||||||| | ||| ||||| | ||||| || | | ||| | || || Sbjct 24627160 TTCAAAATGGTCTTTTGCGAAATCTCCCAGACTGTTTTGTACAGTTTCTTCAATTCATCA 24627219 Query 65073 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 65129 |||| ||| | ||||||| || || | ||| || || |||||| ||||| Sbjct 24627220 GGAATCCTTGCAACGTTCTGAACCGAACCGTTGTTTGCGATTATTTCATTCTTCATCTCC 24627279 Query 65130 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 65189 || | ||| | | || || || || || | | | ||| ||||| || || || ||| Sbjct 24627280 TCGTCCCACAGATCCCTGTCTGTCAAGTCTTTCAACAAATGAGGATTGACGACCTGGAAT 24627339 Query 65190 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 65249 |||||||| | || | || |||||||| || || || || || || | || || || Sbjct 24627340 TCTCCAGAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTG 24627399 Query 65250 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 65309 || ||||||||||| || || || || || ||||| || || | || ||| ||| | | Sbjct 24627400 TTGCCCAAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAAAGAATTGCGA 24627459 Query 65310 AGACCGTATGTTCTG--ATTTTATCTTTTAG 65338 | ||| |||||||| |||||| |||| || Sbjct 24627460 ACACC--ATGTTCTGCAATTTTAGCTTTCAG 24627488 Score = 107 bits (118), Expect = 3e-18 Identities = 231/345 (67%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 65580 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 65639 ||||| || || || || ||| | || || |||| |||||||| || || || ||||| Sbjct 24627886 ATACCAATGGGCCTGTGCCTCGTGTTGGACCTTTCTGCTTCTGGGATGGGGTAGTAATTT 24627945 Query 65640 ATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 65699 | || |||||||||| | |||||| | ||||| | || ||||| ||||| | Sbjct 24627946 AGGTCAATAATTTTATCCAAATTTCTTGTTGTGACTTTTGCGACTTCCTTAAGTTTTGCA 24628005 Query 65700 AAATCAAATCGCTCATCTA-------TTACAAACATGTTCAATGCAACAGATGCCAGATT 65752 ||||| | || | | || |||||||||| || | |||| |||||| | ||| Sbjct 24628006 AAATCGTA-CGTTTTTTTACTGGTATTTACAAACATATTAACGGCAATAGATGCTAAATT 24628064 Query 65753 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 65812 || |||||||| || | | | | ||| || | | || ||||| | |||||| | Sbjct 24628065 GCACACGGCTACTTCGTCTGGAGAAGAATACTGCACAACTTCCGTGCATAAATTACTGCT 24628124 Query 65813 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 65872 |||| || || | ||||||||||| || ||||| ||| || || | || Sbjct 24628125 TCTGATAGTACCAAGGTTTTGTTGATTGGATTTGCGATTACAGTGATCTTTGTATAACAT 24628184 Query 65873 GAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 65917 | | || || |||||||||| ||||| || |||||| |||| Sbjct 24628185 GTAAGGGGTTCCAGTTTCAACTTGAGACATTAAAATCGCAGTCCA 24628229 >seq14 Length=421909 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 || || || ||||||| ||| | ||||||| |||||| | | | | ||| |||||| Sbjct 277594 TTTTTCATTTCATCATCCCAAAGATTTCTCTTTGTTAAATCATTTAATAAATGTGGATTA 277535 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || | |||||||| ||||| || | | ||||||||||||||| || || || ||| Sbjct 277534 ACAATAATGAATTCTCCTGACAAAACACGTCTAGTGTAAATATTACTTGTGTAAGGCTCC 277475 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290 || || ||||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 277474 ACTGATTCATTGTTTCCCAATATCTGAGCTGTAGAAGCTGTTGGCATTGGTGC 277422 Score = 102 bits (112), Expect = 1e-16 Identities = 200/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 65687 ||||||| ||| | ||| |||||||||| | ||| | ||| ||| || || || Sbjct 276917 GGATAATGATTCAGATCAATAATTTTATCTAAATTCTTAGCAACAGTTTTAACAACTTCT 276858 Query 65688 TTCAGTTTGAGAAAATCAAATCGCT------CATCTATTACAAACATGTTCAATGCAACA 65741 |||| ||| ||||||| | || || | |||||||| || | |||| Sbjct 276857 TTCAATTTTAGAAAATTGTAGTACTGTGTTTCAACATCAACAAACATATTAACAGCAATG 276798 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 ||||| | |||||| || ||||| || || | | | |||||||| || |||||||| Sbjct 276797 GATGCTAAATTACACACTGCTACTTCGTTTGGAGAAGAGTATTGTATAATTTCAGTGCAT 276738 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 | |||||| | || || ||||| | |||||||||||| || || || ||| Sbjct 276737 AAATTACTGCTTTTAATAGTTCCAAGATTTTGTTGATTTGATTTACGATTGCAGTGATCT 276678 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 65917 ||||| || || | ||||| |||||||||| || | || || ||| || |||| Sbjct 276677 TTATAGAGCATATAAGGAGTTCCAGTTTCAACTTGTGCTTTTAAAATGGCAGTCCA 276622 Score = 86.0 bits (94), Expect = 8e-12 Identities = 198/292 (68%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 66432 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGT 66490 || || |||||||| || | |||| | ||| ||| ||| |||||||| || || || Sbjct 275836 CACCTGGACATTTGTTGGTGTATAGTACATGCAAAAAAAAAGTGTAGGAGATGCATGTGT 275777 Query 66491 AAACCATTTTTCAGAAAGTAGA-TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 66549 || | ||||||| ||| | || || ||||| || || || | |||| || || Sbjct 275776 GAAGTAACGTTCAGAA-GTATAATTATATGTCTCTATGACTTTTTCAAGATCCTCTTTAT 275718 Query 66550 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 66609 ||| ||||||| || | ||| | ||| | || |||| ||||| | ||||| ||| Sbjct 275717 GAAGAGCTACTGCAACTCTCATAAGCATATCTTGTGGTCGCTCAACCA-CTTGTCCATTA 275659 Query 66610 TTT-TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 | | || ||||| ||| ||||| |||||||| ||||||||||| | ||| ||| Sbjct 275658 ATCCTGAATAAGTAACTTTTCTCCAAGGTTTTAAATCCAAAATAGTTAAAGACAAAATCT 275599 Query 66669 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 66720 | || || || | || || ||| |||| |||| ||| | || || || Sbjct 275598 CTGTCATAGTCTATGGCAGAATTTAGTCTATCTTTATGTTTTTGAATTATAT 275547 Score = 84.2 bits (92), Expect = 3e-11 Identities = 209/313 (67%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 |||| ||||| | ||| ||||| | | |||||| |||||| || || | || | | Sbjct 276223 TATTTTTTTTTAAATCAAGGAATTCAAAAATATCTGCATGCCAGGGCTCTAGATAAAGAG 276164 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | | ||||||| ||||||||| || ||||| || | | | || || || | | Sbjct 276163 CAAATGCACCAGGCCTTTTGTTTCCACCTTGATCAATAAAGCGTACTGTATTGTTGAATA 276104 Query 66253 CTCTCAACATTGGAA-TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC--TTC 66309 |||| | ||| || | |||| | ||| | | ||||| | | || || || ||| Sbjct 276103 CTCTGATCATAGGTACTAATCCATTTGCAAAT-CCATTATTGCT--AGCAATCGCAGTTC 276047 Query 66310 CACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | | || | ||||||| || || ||| || || ||||| ||| || | || Sbjct 276046 CTTTAGCTCTAATATTATGAACACTTATACCAATACCACCTGCGGATTTGCTAATAATTG 275987 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429 | |||| ||||| || || | || || ||||||||||| || |||||| |||| | || Sbjct 275986 CACATCTCTTTAATGTTTCGAAAATTCCTTCTATACTATCTTCAATCATGGTAAGAATAA 275927 Query 66430 AACAGCTAGACAT 66442 |||| ||| |||| Sbjct 275926 AACAACTAAACAT 275914 >seq410 Length=4553683 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || || ||||| | ||| |||||||| || ||||||||||||||||||| || || Sbjct 2615951 TAGGTGTCAATGAGAAGGGAGTACATTTCAGAGTGAATGTTTTCAATGGCCACCTGGAAG 2615892 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 36547 || ||||| || | |||||| || | ||| ||||| | || || || | | ||| Sbjct 2615891 CCATAGAAGCAGCGAGCCTCAGTCACCTGCACTTCCTGGCTGAAACGCTCAACCAGATTC 2615832 Query 36548 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 36591 ||||| || || || || ||| ||||| || ||||| ||||| Sbjct 2615831 TCATTGACAATACCATCCGAGGCAGCAAAGAATGCCAAAACATG 2615788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658122630778320