Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq796 118 8e-22 seq158 104 2e-17 seq335 91.5 1e-13 >seq796 Length=23603 Score = 118 bits (130), Expect = 8e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||||||||||||||| || | || || || |||||||| |||||||||||||||||| Sbjct 4676 TTGTAATCGGACAATGTTCGACCATCCTCTAACTGTTTGCCAGCAAAAATCAATCGCTGT 4735 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | |||||| || || ||| |||| || | | | || || Sbjct 4736 TGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGCTTTAACATTTTCTATAGTATCT 4795 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||| ||||| |||| ||||| || || || || | |||||| ||||||||||||||| Sbjct 4796 GAAGCTTCGACCTCTAAAGTTATGGTCTTGCCTGTCAAAGTTTTGACAAAAATTTGCATT 4855 >seq158 Length=288468 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||||| || |||||||| | |||| ||| || || | ||||||||||| Sbjct 90560 GCCTCCCCTAAGTCTCAAGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCGGA 90501 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| | || || | ||| || || || |||||||| | ||| || || | || Sbjct 90500 CAGAGTACGGCCATCTTCGAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGAGG 90441 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||| || || ||| ||| ||||||| | | | || ||| |||||||| Sbjct 90440 GATACCTTCCTTATC-CTGAATCTTGGCTTTGACGTTTTCGATGGTATCGGAAGCCTCGA 90382 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| || || ||||| ||||| | || || || || || ||||| Sbjct 90381 CTTCTAAAGTGATGGTTTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 90333 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||||| || |||||||| | |||| ||| || || | ||||||||||| Sbjct 91016 GCCTCCCCTAAGTCTCAAGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCGGA 90957 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| | || || | ||| || || || |||||||| | ||| || || | || Sbjct 90956 CAGAGTACGGCCATCTTCGAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGAGG 90897 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||| || || ||| ||| ||||||| | | | || ||| |||||||| Sbjct 90896 GATACCTTCCTTATC-CTGAATCTTGGCTTTGACGTTTTCGATGGTATCGGAAGCCTCGA 90838 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| || || ||||| ||||| | || || || || || ||||| Sbjct 90837 CTTCTAAAGTGATGGTTTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 90789 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||||| || |||||||| | |||| ||| || || | ||||||||||| Sbjct 91472 GCCTCCCCTAAGTCTCAAGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCGGA 91413 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| | || || | ||| || || || |||||||| | ||| || || | || Sbjct 91412 CAGAGTACGGCCATCTTCGAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGAGG 91353 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||| || || ||| ||| ||||||| | | | || ||| |||||||| Sbjct 91352 GATACCTTCCTTATC-CTGAATCTTGGCTTTGACGTTTTCGATGGTATCGGAAGCCTCGA 91294 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| || || ||||| ||||| | || || || || || ||||| Sbjct 91293 CTTCTAAAGTGATGGTTTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 91245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| ||||| |||| ||| ||| || || | |||||| ||||| | ||||| | || Sbjct 91913 TAAGACCAAGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCGGAGAGCGTACGACCATC 91854 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 ||||||||||| |||||||| || || ||||| || || | ||| | || ||||| || Sbjct 91853 TTCCAATTGTTTTCCGGCAAAGATTAAACGCTGCTGGTCTGGCGGGATTCCCTCTTTGTC 91794 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 ||| | ||||| | | | || || |||||||| || | || || || Sbjct 91793 CTGGATTTTAGCCTTGACATTTTCGATCGTATCAGAGGCCTCGACTTCAAGTGTGATGGT 91734 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| ||||| | ||| ||||| || || ||||| Sbjct 91733 TTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 91701 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| |||| | ||||| |||| ||| ||| || || | |||||||||||| Sbjct 90331 CCTCCACGAAGTCGAAGTACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCGGAC 90272 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | ||| || || ||||| || || ||||| ||||| | || Sbjct 90271 AAAGTTCGCCCATCCTCGAGTTGCTTTCCAGCAAAGATTAAACGCTGCTGATCTGGGGGA 90212 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | || || | ||| ||||||| || || || Sbjct 90211 ATACCTTCCTTGTCTTGGATCTTAGCCTTTACGTTTTCAATTGTGTCGGAGGCTTCAACT 90152 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || | ||| || || || |||||||| Sbjct 90151 TCAAGGGTAATGGTCTTACCAGTCAAAGTCTTTACGAAGATTTGCAT 90105 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||| || |||||||| ||| | || || | ||| || || |||||| Sbjct 89839 TCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCGAGTTGCTTACCAGCAAAA 89780 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| | ||| ||||| | || | ||||||||| || || | ||||| | Sbjct 89779 ATCAGCCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTAGCCTTGACATTC 89720 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| ||||| || | || || ||||| || || || || || ||| Sbjct 89719 TCAATCGTATCAGAAGCTTCGACTTCCAGAGTAATTGTTTTGCCAGTAAGCGTCTTAACA 89660 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 89659 AAAATTTGCAT 89649 >seq335 Length=1594555 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| || || | | || | ||||| ||| || ||||| | ||||||||| || Sbjct 905814 GCCTCCTCGAAGACGAAGAACAAGATGGAGAGTTGATTCTTTTTGGATATTGTAATCTGA 905755 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| | | | || |||| ||| || || || ||||||| ||||||||||| | || Sbjct 905754 TAGTGTTCTTCCATCTTCCAGTTGCTTTCCTGCGAAAATCAGACGCTGTTGATCTGGTGG 905695 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| |||| || | ||| || || || || || Sbjct 905694 GATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTTTCAATGGTATCTGATGCTTCAAC 905635 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || ||||| || |||||||||||||| Sbjct 905634 CTCCAGAGTGATGGTTTTACCAGTCAGAGTCTTTACAAAAATTTGCAT 905587 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | ||| |||||| || | |||||| || || | |||||| | || || Sbjct 905111 ACCAAGTGAAGAGTTGACTCCTTCTGAATATTGTAGTCAGAAAGAGTACGTCCATCTTCT 905052 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || ||||| || | ||||| ||||| | || | || ||||| || | Sbjct 905051 AATTGTTTACCAGCAAAGATAAGACGCTGCTGATCTGGAGGAATTCCCTCTTTGTCCTGG 904992 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || ||||||| | ||| ||||| ||||| || || | || || ||||| Sbjct 904991 ATTTTAGCTTTGACATTTTCAATGGTGTCTGAGGCCTCCACTTCCAGAGTGATGGTTTTG 904932 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || | ||||||||||| || ||||| || Sbjct 904931 CCAGTCAAGGTTTTCACAAAGATCTGCATCTT 904900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381341256849684