Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 201 2e-46 seq14 120 4e-22 seq410 91.5 2e-13 >seq1 Length=33571687 Score = 201 bits (222), Expect = 2e-46 Identities = 325/465 (70%), Gaps = 2/465 (0%) Strand=Plus/Plus Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 |||||| || || || ||||||||| ||| ||||||||||||||||| |||||| Sbjct 24628359 TATAATTTATCAAATTCCTCTCCCCAAACATCAGGTAATCCAGGACATTCATGTGGACAC 24628418 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 || || ||||| | || ||| |||| ||||| || | || || ||||| | | Sbjct 24628419 ATTAAACTCCACTTTGTGTCCTCAAGAACTCTCTTCATGAACAAGTCCGGGATCCATAAA 24628478 Query 72055 GCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 || ||| || || ||||| | ||| | || || || ||||| |||||||| |||||||| Sbjct 24628479 GC-ATAGAAAAGGTCTCTCGCTCTGTTTTCTTCTTTACCTGTGTTCTTTTTGAGATCGAG 24628537 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 || | | || |||| ||||||||||||||| || ||||| | |||| || | || Sbjct 24628538 AAATTCGAAGATGTCAGCATGCCACGGTTCCAAATACATGGCAAACGCTCCAGGTCTCTT 24628597 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 |||||| || ||||| | ||| | || |||||||| || ||||| | ||| |||| | Sbjct 24628598 GTTTCCACCTTGATCGACGTAACGCGCAGTGTTATTGTATACTCTAATCATAGGAACTAA 24628657 Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT 72293 |||||| ||| |||| || || || || || | ||| |||| | ||| || || Sbjct 24628658 ACCATTAGATACACCGTTTGTGCCAGAAATTCGAGTACCAGTGGCTCTTATAGTGTGAAC 24628717 Query 72294 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 72353 | ||| || || || || ||| || ||| || |||| || | |||||||| Sbjct 24628718 ACTCAAACCAATGCCACCAGCAGATTTGCTGACTAAAGCACATCTCTTCAGTGTATCATA 24628777 Query 72354 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || || || ||||| || || |||| |||| || ||||| || Sbjct 24628778 AATTCCTTCAATACTGTCTTCAGTCATTGTAAGAAGGAAACAACT 24628822 Score = 141 bits (156), Expect = 1e-28 Identities = 265/389 (68%), Gaps = 3/389 (1%) Strand=Plus/Plus Query 70915 GCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 70974 |||||||| | ||| | |||||| ||||| |||||||| || | || ||||||||| Sbjct 24627100 GCTATGTGTACATTTAGAGACTGAGACTGATCAATGAAGGCACCTCGATCCGCAGCCATT 24627159 Query 70975 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 71034 || | || |||||||| | ||| ||||| | ||||| || | | ||| | || || Sbjct 24627160 TTCAAAATGGTCTTTTGCGAAATCTCCCAGACTGTTTTGTACAGTTTCTTCAATTCATCA 24627219 Query 71035 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCT 71091 |||| ||| | ||||||| || || | ||| || || ||| || ||||| Sbjct 24627220 GGAATCCTTGCAACGTTCTGAACCGAACCGTTGTTTGCGATTATTTCATTCTTCATCTCC 24627279 Query 71092 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAAT 71151 || | ||| | | || || || || || | | | ||||||||| || || || ||| Sbjct 24627280 TCGTCCCACAGATCCCTGTCTGTCAAGTCTTTCAACAAATGAGGATTGACGACCTGGAAT 24627339 Query 71152 TCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTA 71211 |||||||| | || | | |||||||| || || || || || || | || || || Sbjct 24627340 TCTCCAGAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTG 24627399 Query 71212 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTA 71271 || ||||||||||| || || || || || ||||| || || | || | | ||| | | Sbjct 24627400 TTGCCCAAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAAAGAATTGCGA 24627459 Query 71272 AGACCATGTGATCGGATTTTATCTTTTAG 71300 | ||||||| | |||||| |||| || Sbjct 24627460 ACACCATGTTCTGCAATTTTAGCTTTCAG 24627488 >seq14 Length=421909 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||| || ||| | ||||| || ||||| || || |||| ||| | ||||| Sbjct 277625 CTGAATAGAACCATTGTTGGCAATTATTTCGTTTTTCATTTCATCATCCCAAAGATTTCT 277566 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || |||||| | | | | ||| |||||||| | |||||||| ||||| || | Sbjct 277565 CTTTGTTAAATCATTTAATAAATGTGGATTAACAATAATGAATTCTCCTGACAAAACACG 277506 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 | ||||||||||||||| || || || |||||||| ||||| |||||||| || ||||| Sbjct 277505 TCTAGTGTAAATATTACTTGTGTAAGGCTCCACTGATTCATTGTTTCCCAATATCTGAGC 277446 Query 71229 AGTTGATGCAGTCGGCATAGGTGC 71252 || || || || ||||| ||||| Sbjct 277445 TGTAGAAGCTGTTGGCATTGGTGC 277422 Score = 105 bits (116), Expect = 9e-18 Identities = 229/343 (67%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| | |||||||| | ||| || |||| ||||| | ||||||| ||| | Sbjct 276964 TACCAACTGGTCTGTGCATTAAATTGGATTTTTCTGCTTCGATGAGTGGATAATGATTCA 276905 Query 71603 TATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 71662 ||| |||||||||| | ||| | | | ||| || || || || | ||| |||| Sbjct 276904 GATCAATAATTTTATCTAAATTCTTAGCAACAGTTTTAACAACTTCTTTCAATTTTAGAA 276845 Query 71663 AATCAAA------TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTAC 71716 ||| | | | || | ||||||| || | |||| ||||| | ||||| Sbjct 276844 AATTGTAGTACTGTGTTTCAACATCAACAAACATATTAACAGCAATGGATGCTAAATTAC 276785 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 | || ||||| || || | | | |||||||||||||||||||| | |||||| | | Sbjct 276784 ACACTGCTACTTCGTTTGGAGAAGAGTATTGTATAATTTCAGTGCATAAATTACTGCTTT 276725 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 | || ||||| | |||||||||||| || || || ||| ||||| || ||| Sbjct 276724 TAATAGTTCCAAGATTTTGTTGATTTGATTTACGATTGCAGTGATCTTTATAGAGCATAT 276665 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 | ||||| |||||||||| || | || || ||| || |||| Sbjct 276664 AAGGAGTTCCAGTTTCAACTTGTGCTTTTAAAATGGCAGTCCA 276622 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/292 (69%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGT 72452 || || |||||||| || | |||| | ||| ||| ||| |||||||| || || || Sbjct 275836 CACCTGGACATTTGTTGGTGTATAGTACATGCAAAAAAAAAGTGTAGGAGATGCATGTGT 275777 Query 72453 AAACCATTTTTCAGACAGTAGA-TTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 72511 || | |||||| |||| | || || ||||| || || ||| | |||| || || Sbjct 275776 GAAGTAACGTTCAGA-AGTATAATTATATGTCTCTATGACTTTTTCAAGATCCTCTTTAT 275718 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT-ATTT 72570 | | |||| || || | ||| | ||||| || |||| ||||| | ||||| ||| Sbjct 275717 GAAGAGCTACTGCAACTCTCATAAGCATATCTTGTGGTCGCTCAACCA-CTTGTCCATTA 275659 Query 72571 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 72630 || | || ||||| ||| ||||| |||||||| ||||||||||| | ||| ||| Sbjct 275658 ATCCTGAATAAGTAACTTTTCTCCAAGGTTTTAAATCCAAAATAGTTAAAGACAAAATCT 275599 Query 72631 CGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682 | || || || | ||||| ||| |||| |||| ||| | || ||||| Sbjct 275598 CTGTCATAGTCTATGGCAGAATTTAGTCTATCTTTATGTTTTTGAATTATAT 275547 Score = 86.0 bits (94), Expect = 8e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 71392 TATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTT 71451 |||||||| | || || ||| | ||||||||| || ||||| |||||| |||| | ||| Sbjct 277194 TATGGTCCATTTTCTTTGGCCAATTCACAACTAGCTTCTAAAGCTCCAAAATATAATGTT 277135 Query 71452 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA 71511 |||||||| | |||| || | || || || || || |||||||| | | Sbjct 277134 TCGAAAATTTGAATATTTAGCTGCTGAGCCTCTTTACTCTCGAATGGATAGCGCATTAAC 277075 Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 | ||| |||||||| |||||||| || || ||||| Sbjct 277074 AAAAAAGCGTCTGCCAATCCTTGTACCCCGATACC 277040 >seq410 Length=4553683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || ||||||||||||||||||| ||| || || ||||| || | ||||| Sbjct 2615930 TACATTTCAGAGTGAATGTTTTCAATGGCCACCTGGAAGCCATAGAAGCAGCGAGCCTCA 2615871 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || ||||| ||||| | || || ||| | | ||| || || || || || || | Sbjct 2615870 GTCACCTGCACTTCCTGGCTGAAACGCTCAACCAGATTCTCATTGACAATACCATCCGAG 2615811 Query 42476 GCTGCAAAAAACGCCAATACATG 42498 || ||||| || ||||| ||||| Sbjct 2615810 GCAGCAAAGAATGCCAAAACATG 2615788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671088042414480