Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq158 91.5 1e-13 seq335 84.2 2e-11 >seq158 Length=288468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| ||||| || || || |||||| || ||||| || ||| | ||| |||| Sbjct 91913 TAAGACCAAGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCGGAGAGCGTACGACCATC 91854 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||||||||||||| ||||| || || || |||||||| | || | || ||||| || Sbjct 91853 TTCCAATTGTTTTCCGGCAAAGATTAAACGCTGCTGGTCTGGCGGGATTCCCTCTTTGTC 91794 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||||| ||||| | | | ||||| | | ||| || || | || || || Sbjct 91793 CTGGATTTTAGCCTTGACATTTTCGATCGTATCAGAGGCCTCGACTTCAAGTGTGATGGT 91734 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| ||||||||||| || || ||||| Sbjct 91733 TTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 91701 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | || ||||| || || || |||||||||||||| || ||| Sbjct 89647 CCTCCTCTCAAACGCAAGACCAAGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAC 89588 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| |||| || | || || || || || ||||||| |||||||| | || Sbjct 89587 AGAGTACGTCCATCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 89528 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| ||| ||| || ||||| | ||| ||| || | | ||| || Sbjct 89527 ATGCCCTCTTTGTCTTGAATCTTGGCCTTGACATTCTCAATAGTGTCAGAAGCCTCAACC 89468 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || ||||| || ||||| ||||| || |||||| Sbjct 89467 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTAACAAAGATCTGCATG 89420 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||| || || || ||| || |||| || | ||| || || ||||| Sbjct 89839 TCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCGAGTTGCTTACCAGCAAAA 89780 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 |||| || ||||| || |||| | ||||||||| ||| |||||| ||||| | Sbjct 89779 ATCAGCCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTAGCCTTGACATTC 89720 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | | || || || | ||||||||||| || || | ||||| ||| Sbjct 89719 TCAATCGTATCAGAAGCTTCGACTTCCAGAGTAATTGTTTTGCCAGTAAGCGTCTTAACA 89660 Query 44111 AATATTTGCATG 44122 || ||||||||| Sbjct 89659 AAAATTTGCATG 89648 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| | | || || |||| ||| |||||| ||||||||||| ||||| || Sbjct 90104 ACCTCCACGAAGTCGCAATACCAGATGCAGCGTGGATTCTTTTTGAATGTTATAGTCTGA 90045 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| || |||| || ||||||||||| || || ||||||| |||||||| | || Sbjct 90044 CAATGTGCGACCATCCTCTAATTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGG 89985 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || |||||| || || | | | || || | | ||| || Sbjct 89984 GATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTTTCGATCGTGTCGGAAGCCTCGAC 89925 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| || | ||||| || || || ||||| Sbjct 89924 TTCAAGTGTGATGGTTTTACCCGTGAGTGTCTTAACGAAGATCTGCAT 89877 >seq335 Length=1594555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | |||| ||| |||||| |||||||||||| || || || | Sbjct 906501 CCTCCTCTCAGACGAAGTACCAGATGGAGCGTGGACTCTTTTTGAATGTTGTAGTC-TGA 906443 Query 43955 AATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | |||| |||| ||||| || ||||| || | || |||||||| | || Sbjct 906442 AAGGGTCCTTCCATCCTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGTGG 906383 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| ||||| |||||| ||||| | | | ||| || | | || || Sbjct 906382 GATGCCTTCCTTATCCTGAATTTTAGCCTTGACGTTTTCGATAGTGTCGGAAGCTTCGAC 906323 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| ||||| || || ||||| || ||||| Sbjct 906322 TTCTAAGGTTATGGTTTTACCAGTTAAGGTTTTGACAAAAATCTGCAT 906275 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATC 43968 || |||| ||| |||||| |||||||||||| || || || | || | | || ||| Sbjct 906714 AAGACCAGATGAAGCGTGGACTCTTTTTGAATGTTGTAGTC-TGAAAGGGTCCTTCCATC 906656 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||| ||||| || ||||| || | || |||||||| | || | ||||| ||||| Sbjct 906655 CTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTATC 906596 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 |||||| ||||| | | | ||| || | | || || || | || || || Sbjct 906595 CTGAATTTTAGCCTTGACGTTTTCGATAGTGTCGGAAGCTTCAACTTCTAAGGTGATGGT 906536 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||||||||||| || || || || || |||||| Sbjct 906535 TTTACCGGTTAAGGTTTTGACGAAAATCTGCATG 906502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354751233150504