Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq335 96.9 3e-15 seq158 91.5 1e-13 seq796 87.8 2e-12 >seq335 Length=1594555 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGT-ATGTTGTAATCGCCCATAGTTTTAGA-ATC-TTCCAA 20061 ||| ||||| ||||||||||| ||||||||||| || |||| | ||| ||||| Sbjct 906021 ATGGAGTGTTGATTCTTTTTGGGATGTTGTAATCAGACAGGGTTTCTGCCATCCTTCCAG 905962 Query 20062 TTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAAT 20121 |||||| || ||| | || || | ||||| || || | |||||||||||| ||| Sbjct 905961 TTGTTTACCAGCAAATATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAAT 905902 Query 20122 TTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCC 20181 || ||| || | | | || ||| || || ||||| |||||||| || || Sbjct 905901 CTTGGCTTTGACATTTTCGATAGTATCAGAAGCCTCTACTTCCAAAGTAATGGTCTTTCC 905842 Query 20182 GGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||||||||||||||||||| Sbjct 905841 AGTCAAAGTTTTGACAAAAATTTGCAT 905815 >seq158 Length=288468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| ||||| ||||| |||||||| || || || |||||| | ||| Sbjct 89851 TGAAGTGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCGAGTTGC 89792 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| |||||||| ||||| || | ||||||||||| |||||| Sbjct 89791 TTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTA 89732 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | ||| | ||| || ||| ||||| ||||| |||||||| || Sbjct 89731 GCCTTGACATTCTCAATCGTATCAGAAGCTTCGACTTCCAGAGTAATTGTTTTGCCAGTA 89672 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | ||| || |||||||||||||| Sbjct 89671 AGCGTCTTAACAAAAATTTGCAT 89649 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 ||||| |||||||| || || || ||||| || |||||||||||| || ||| | Sbjct 90547 CTCAAGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCGGACAGAGTACGGCCA 90488 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| | ||| || || || |||| | |||||| || || || | ||||| || Sbjct 90487 TCTTCGAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGAGGGATACCTTCCTTA 90428 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || ||| || ||| || | | | | |||| || || ||| | || ||| Sbjct 90427 TCCTGAATCTTGGCTTTGACGTTTTCGATGGTATCGGAAGCCTCGACTTCTAAAGTGATG 90368 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||||||||| || ||||| || || ||||| Sbjct 90367 GTTTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 90333 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 ||||| |||||||| || || || ||||| || |||||||||||| || ||| | Sbjct 91003 CTCAAGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCGGACAGAGTACGGCCA 90944 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| | ||| || || || |||| | |||||| || || || | ||||| || Sbjct 90943 TCTTCGAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGAGGGATACCTTCCTTA 90884 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || ||| || ||| || | | | | |||| || || ||| | || ||| Sbjct 90883 TCCTGAATCTTGGCTTTGACGTTTTCGATGGTATCGGAAGCCTCGACTTCTAAAGTGATG 90824 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||||||||| || ||||| || || ||||| Sbjct 90823 GTTTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 90789 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 ||||| |||||||| || || || ||||| || |||||||||||| || ||| | Sbjct 91459 CTCAAGACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCGGACAGAGTACGGCCA 91400 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| | ||| || || || |||| | |||||| || || || | ||||| || Sbjct 91399 TCTTCGAGTTGCTTTCCAGCGAAAATCAACCTCTGCTGGTCTGGAGGGATACCTTCCTTA 91340 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || ||| || ||| || | | | | |||| || || ||| | || ||| Sbjct 91339 TCCTGAATCTTGGCTTTGACGTTTTCGATGGTATCGGAAGCCTCGACTTCTAAAGTGATG 91280 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||||||||| || ||||| || || ||||| Sbjct 91279 GTTTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 91245 >seq796 Length=23603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 20019 CTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAA 20078 |||| ||||||||||||||| || ||| | ||| || || |||||||| ||| ||| Sbjct 4665 CTTTCTGTATGTTGTAATCGGACAATGTTCGACCATCCTCTAACTGTTTGCCAGCAAAAA 4724 Query 20079 TAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGC 20138 | | | ||||||||| || | ||||| || || ||||| ||| || | Sbjct 4725 TCAATCGCTGTTGATCTGGAGGAATACCTTCCTTATCTTGGATTTTAGCTTTAACATTTT 4784 Query 20139 CAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAA 20198 | | || ||| || ||| || | || ||||| ||||| ||||| |||||||||| Sbjct 4785 CTATAGTATCTGAAGCTTCGACCTCTAAAGTTATGGTCTTGCCTGTCAAAGTTTTGACAA 4844 Query 20199 AAATTTGCATT 20209 ||||||||||| Sbjct 4845 AAATTTGCATT 4855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419556016541538