Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq335 93.3 4e-14 seq158 91.5 1e-13 >seq335 Length=1594555 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | || || | |||||| ||| ||| |||||||||||||| || | Sbjct 906729 CCTCCGCGAAGACGCAAGACCAGATGAAGCGTGGACTCTTTTTGAATGTTGTAGTCTGA- 906671 Query 48560 AATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || ||||||||||| |||||| | | || | ||||||||| || || Sbjct 906670 AAGGGTCCTTCCATCCTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGTGG 906611 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| |||||| ||||| | || || |||| || || Sbjct 906610 GATGCCTTCCTTATCCTGAATTTTAGCCTTGACGTTTTCGATAGTGTCGGAAGCTTCAAC 906551 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || |||||||||||||| | ||||| || ||||||||||| Sbjct 906550 TTCTAAGGTGATGGTTTTACCGGTTAAGGTTTTGACGAAAATCTGCAT 906503 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCT 48581 ||| || ||| ||| |||||||||||||| || | || ||| || |||||||||| Sbjct 906478 ATGGAGCGTGGACTCTTTTTGAATGTTGTAGTCTGA-AAGGGTCCTTCCATCCTCCAGCT 906420 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | |||||| | | || | ||||||||| || || | | |||||| ||| ||||| Sbjct 906419 GTTTACCGGCAAAGATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTATCCTGAATTT 906360 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCT-CGACTGTTATGGTTTTACCG 48700 | ||||| | || || |||| || || || || | | |||||||||||||| Sbjct 906359 TAGCCTTGACGTTTTCGATAGTGTCGGAAG-CTTCGACTTCTAAGGTTATGGTTTTACCA 906301 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||||| |||||||||||||| Sbjct 906300 GTTAAGGTTTTGACAAAAATCTGCAT 906275 >seq158 Length=288468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||||||| ||||||||||||||||| |||| |||| || | || || || ||| Sbjct 89851 TGAAGTGTGGATTCCTTTTGAATGTTGTAGTCAGACAATGTGCGTCCATCTTCGAGTTGC 89792 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | |||| | | ||||||||| || | || ||| ||||| |||||| Sbjct 89791 TTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGAATTTTA 89732 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGT 48702 ||||| | | | || ||||| | || || || | || | || || ||||| || || Sbjct 89731 GCCTTGACATTCTCAATCGTATCAGAAG-CTTCGACTTCCAGAGTAATTGTTTTGCCAGT 89673 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || |||||||| ||||| Sbjct 89672 AAGCGTCTTAACAAAAATTTGCAT 89649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421219892874098