Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28]
6,098 sequences; 295,780,872 total letters
Query= NC_005905.1
Length=86462
Score E
Sequences producing significant alignments: (Bits) Value
seq314 253 1e-62
seq138 111 9e-20
>seq314
Length=14808294
Score = 253 bits (280), Expect = 1e-62
Identities = 428/609 (70%), Gaps = 13/609 (2%)
Strand=Plus/Minus
Query 3534 TTTTTATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTAT 3593
||||| ||||||||| |||||| |||||||| ||||||||| | || |||||| | |
Sbjct 3992542 TTTTTCTCAACAGAGCTGCTGTTAAAATGGCCAACATTGATAAAGCTTGTAATTTCATGT 3992483
Query 3594 TTACACGATTGAATGA--TGGA-TCAAATGAATTGATATATTTTGCTGACGTATGCGCTG 3650
| || | | | | || | ||| |||| ||| | |||||||| || || || || |
Sbjct 3992482 TCACGCAACCAGACAACTTGCAGTCAGATGACTTGCTGTATTTTGCAGATGTTTGTGCAG 3992423
Query 3651 GTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATG 3710
| || || || |||||||||||| | || ||||| || || ||| ||||| | ||
Sbjct 3992422 GACCTGGAGGATTCAGTGAATATGTCTTGTGGAGGAAAAAGTGGCGAGCAAAAGGGTTTG 3992363
Query 3711 GTATGACG-TTACGCGaaa--aaaaTGATTTTCAACTGAACAGATTTT-ACGATA-ACTT 3765
|| | ||| ||| ||| ||||||| ||| |||| | |||||| | | | ||
Sbjct 3992362 GTTTTACGCTTAA---AAATGAAAATGACTTTAAACTCCAT-GATTTTCATGCTGGACCA 3992307
Query 3766 TTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACA 3825
| || ||||||| || || |||||||| || | ||||||||| | || | | |
Sbjct 3992306 TGCG-AAACTTTTCATCCTTATTATGGACCTAAAGAAGATGGTAATGTTTATGACCCCAA 3992248
Query 3826 AAATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTT 3885
||||||| | || || ||||||||||| | || | || ||||||| |||||
Sbjct 3992247 AAATCAGGTGGCCTTAAAAGAGTTGATTATGAAACAAACAGGAGATCAAGGTGTTCATTT 3992188
Query 3886 TATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATC 3945
|||||||||||| ||||| || || || || || || |||||||| || ||||| | ||
Sbjct 3992187 TATGATGGCTGATGGTGGATTTTCTGTCGAAGGACAGGAAAATATACAGGAAATTCTTTC 3992128
Query 3946 GAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCA 4005
|| || | || | ||||| |||||| | || ||||||| | || | |||||| ||
Sbjct 3992127 AAAGCAGTTATACCTTTGTCAGTGTTTAGTAGCGCTGATGATTGTCCGTACTGGTGGACA 3992068
Query 4006 TTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGAT 4065
| ||| | || || || ||| | |||||||| ||||||| || |||| || | ||
Sbjct 3992067 CTTTGTGACAAAGTTGTTTGATTTGTTTACACCATTTAGTGGAGGACTAGTTTACATAAT 3992008
Query 4066 GTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTC 4125
|||| | | ||| ||| | ||||||| || ||| || |||| |||| ||||||||
Sbjct 3992007 GTATCGCTGCTTTGATCAAGTCAGTATTTTTAAGCCAAATACATCTAGACCAGCCAATTC 3991948
Query 4126 TGAAAGATA 4134
|||||||||
Sbjct 3991947 TGAAAGATA 3991939
>seq138
Length=30297376
Score = 111 bits (122), Expect = 9e-20
Identities = 142/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 5897 AATCATGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAG 5956
|||| ||||||||| | ||||| ||||| || || || |||| || |||| ||
Sbjct 24862372 AATCTTGGGGTGGTATTCCAGAGGGTCAGATTTGCGCCGCATTCCCAGCTGGAGGTAGAG 24862431
Query 5957 ACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATCG 6016
|| | ||||| ||||| ||||||||||| | || | | | || ||||||||| |
Sbjct 24862432 ACACCTGCCAGGGTGACTCGGGTGGCCCTCTCGTCCTTGCTGGACGACAAGCTGGTATTG 24862491
Query 6017 TGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCGC 6076
| |||||||| ||||| || | ||| | |||| || |||| |||||| ||||||||
Sbjct 24862492 TATCATGGGGCAATGGCTGCGCTCGAAAGGGATACCCTGGAGTTTACACCGAAATCGCAT 24862551
Query 6077 CGTTCCGACACTGGAT 6092
| ||||| |||||||
Sbjct 24862552 CTTTCCGTGACTGGAT 24862567
Score = 100 bits (110), Expect = 2e-16
Identities = 138/191 (72%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 5905 GGTGGTTTGCCAGAAAACCAGATATGTGCGGCTG-CTCC--AGGAGGTGGTAAAGACGCA 5961
|||||| | || || ||||| ||||| ||| || | || ||||| || |||||
Sbjct 24849599 GGTGGTGTTCCGGAGGGTCAGATCTGTGCTGCTTACTACGGAGTCGGTGGAAAGGACGCC 24849658
Query 5962 TGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATCGTGTCA 6021
||||| |||||||| ||||| || |||| | ||||| || | ||||| ||||| ||
Sbjct 24849659 TGCCAGGGTGATTCCGGTGGTCCTTTAGCTATCGATGGACGTCTTGCTGGAATCGTTTCT 24849718
Query 6022 TGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCGCCGTTC 6081
|||||||| || || | | | ||| || ||||||| |||||||||||||| | |
Sbjct 24849719 TGGGGTAACGGCTGCGCTGATCCAGAATACCCCGGAGTATACACTGAAATCGCAAATTAC 24849778
Query 6082 CGACACTGGAT 6092
|| |||||||
Sbjct 24849779 CGCGACTGGAT 24849789
Score = 93.3 bits (102), Expect = 2e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 5923 CAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAGACGCATGCCAAGGTGATTCGGGTGGC 5982
||||| || || ||| |||| ||||||||||||| | || || ||||| || |||||
Sbjct 24872441 CAGATCTGCGCCGCTTTCCCAGCAGGTGGTAAAGACACCTGTCAGGGTGACTCTGGTGGA 24872382
Query 5983 CCGTTAGTTGTCGATAACCGCTTAGCTGGTATCGTGTCATGGGGTAATGGATGTGGTCGT 6042
||| | ||| | | | || |||||| ||||| |||||||| |||||||||| |
Sbjct 24872381 CCGCTGGTTATTGCTGGACGTCAAGCTGGAATCGTCTCATGGGGCAATGGATGTGCGAGG 24872322
Query 6043 ACAGGATGGCCCGGAGCTTACACTGAAATCGCGCCGTTCCGACACTGGATT 6093
| |||| || || | |||||||| || ||| | | || ||||||||
Sbjct 24872321 AAGGGATACCCTGGCGTATACACTGAGATTGCGTCAGTTCGCGACTGGATT 24872271
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 5897 AATCATGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAG 5956
|| ||||||||||| | || | ||||| || || ||| |||| |||||||| |
Sbjct 24870750 AACCATGGGGTGGTATTCCCCAGGGACAGATTTGCGCTGCTTTCCCAGCCGGTGGTAAGG 24870691
Query 5957 ACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATCG 6016
|| | |||||||| ||||| ||||||||| | || | | | || |||||| || |
Sbjct 24870690 ACACCTGCCAAGGCGATTCCGGTGGCCCGCTCGTCATTGCTGGACGACAAGCTGGAATTG 24870631
Query 6017 TGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCGC 6076
| || ||||| || || |||| | | |||| ||||||| |||||||| || |||
Sbjct 24870630 TCTCGTGGGGCAACGGCTGTGCCAGGAAGGGATACCCCGGAGTCTACACTGAGATTGCGG 24870571
Query 6077 CGTTCCGACACTGGAT 6092
| | ||| | |||||
Sbjct 24870570 CTGTTCGAGAATGGAT 24870555
Score = 86.0 bits (94), Expect = 3e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 5896 CAATCATGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAA 5955
||||| |||||||| | || || ||||| || || || |||| || || ||
Sbjct 24867192 CAATCTTGGGGTGGAGTCCCCGAGGGACAGATTTGCGCTGCGTTCCCAGCTGGAGGCAAG 24867251
Query 5956 GACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATC 6015
||| | ||||| || || ||||||||||| |||| ||| | || |||||| ||
Sbjct 24867252 GACACTTGCCAGGGCGACTCGGGTGGCCCACTAGTCATCGCTGGACGACAAGCTGGAATT 24867311
Query 6016 GTGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCG 6075
|| |||||||| || ||||||| ||| | || | ||||||| ||| || ||| | ||
Sbjct 24867312 GTATCATGGGGCAACGGATGTGCTCGAAAGGGCTACCCCGGAGTTTATACCGAAGTAGCT 24867371
Query 6076 CCGTTCCGACACTGGAT 6092
| |||| |||||||
Sbjct 24867372 TCTTTCCAGGACTGGAT 24867388
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 276533046709294
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |