Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq314 253 1e-62 seq138 111 9e-20 >seq314 Length=14808294 Score = 253 bits (280), Expect = 1e-62 Identities = 428/609 (70%), Gaps = 13/609 (2%) Strand=Plus/Minus Query 3534 TTTTTATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTCGTAT 3593 ||||| ||||||||| |||||| |||||||| ||||||||| | || |||||| | | Sbjct 3992542 TTTTTCTCAACAGAGCTGCTGTTAAAATGGCCAACATTGATAAAGCTTGTAATTTCATGT 3992483 Query 3594 TTACACGATTGAATGA--TGGA-TCAAATGAATTGATATATTTTGCTGACGTATGCGCTG 3650 | || | | | | || | ||| |||| ||| | |||||||| || || || || | Sbjct 3992482 TCACGCAACCAGACAACTTGCAGTCAGATGACTTGCTGTATTTTGCAGATGTTTGTGCAG 3992423 Query 3651 GTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGTTATG 3710 | || || || |||||||||||| | || ||||| || || ||| ||||| | || Sbjct 3992422 GACCTGGAGGATTCAGTGAATATGTCTTGTGGAGGAAAAAGTGGCGAGCAAAAGGGTTTG 3992363 Query 3711 GTATGACG-TTACGCGaaa--aaaaTGATTTTCAACTGAACAGATTTT-ACGATA-ACTT 3765 || | ||| ||| ||| ||||||| ||| |||| | |||||| | | | || Sbjct 3992362 GTTTTACGCTTAA---AAATGAAAATGACTTTAAACTCCAT-GATTTTCATGCTGGACCA 3992307 Query 3766 TTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCACA 3825 | || ||||||| || || |||||||| || | ||||||||| | || | | | Sbjct 3992306 TGCG-AAACTTTTCATCCTTATTATGGACCTAAAGAAGATGGTAATGTTTATGACCCCAA 3992248 Query 3826 AAATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACATTT 3885 ||||||| | || || ||||||||||| | || | || ||||||| ||||| Sbjct 3992247 AAATCAGGTGGCCTTAAAAGAGTTGATTATGAAACAAACAGGAGATCAAGGTGTTCATTT 3992188 Query 3886 TATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATC 3945 |||||||||||| ||||| || || || || || || |||||||| || ||||| | || Sbjct 3992187 TATGATGGCTGATGGTGGATTTTCTGTCGAAGGACAGGAAAATATACAGGAAATTCTTTC 3992128 Query 3946 GAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCA 4005 || || | || | ||||| |||||| | || ||||||| | || | |||||| || Sbjct 3992127 AAAGCAGTTATACCTTTGTCAGTGTTTAGTAGCGCTGATGATTGTCCGTACTGGTGGACA 3992068 Query 4006 TTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGAT 4065 | ||| | || || || ||| | |||||||| ||||||| || |||| || | || Sbjct 3992067 CTTTGTGACAAAGTTGTTTGATTTGTTTACACCATTTAGTGGAGGACTAGTTTACATAAT 3992008 Query 4066 GTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGACCGGCCAATTC 4125 |||| | | ||| ||| | ||||||| || ||| || |||| |||| |||||||| Sbjct 3992007 GTATCGCTGCTTTGATCAAGTCAGTATTTTTAAGCCAAATACATCTAGACCAGCCAATTC 3991948 Query 4126 TGAAAGATA 4134 ||||||||| Sbjct 3991947 TGAAAGATA 3991939 >seq138 Length=30297376 Score = 111 bits (122), Expect = 9e-20 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 5897 AATCATGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAG 5956 |||| ||||||||| | ||||| ||||| || || || |||| || |||| || Sbjct 24862372 AATCTTGGGGTGGTATTCCAGAGGGTCAGATTTGCGCCGCATTCCCAGCTGGAGGTAGAG 24862431 Query 5957 ACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATCG 6016 || | ||||| ||||| ||||||||||| | || | | | || ||||||||| | Sbjct 24862432 ACACCTGCCAGGGTGACTCGGGTGGCCCTCTCGTCCTTGCTGGACGACAAGCTGGTATTG 24862491 Query 6017 TGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCGC 6076 | |||||||| ||||| || | ||| | |||| || |||| |||||| |||||||| Sbjct 24862492 TATCATGGGGCAATGGCTGCGCTCGAAAGGGATACCCTGGAGTTTACACCGAAATCGCAT 24862551 Query 6077 CGTTCCGACACTGGAT 6092 | ||||| ||||||| Sbjct 24862552 CTTTCCGTGACTGGAT 24862567 Score = 100 bits (110), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 5905 GGTGGTTTGCCAGAAAACCAGATATGTGCGGCTG-CTCC--AGGAGGTGGTAAAGACGCA 5961 |||||| | || || ||||| ||||| ||| || | || ||||| || ||||| Sbjct 24849599 GGTGGTGTTCCGGAGGGTCAGATCTGTGCTGCTTACTACGGAGTCGGTGGAAAGGACGCC 24849658 Query 5962 TGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATCGTGTCA 6021 ||||| |||||||| ||||| || |||| | ||||| || | ||||| ||||| || Sbjct 24849659 TGCCAGGGTGATTCCGGTGGTCCTTTAGCTATCGATGGACGTCTTGCTGGAATCGTTTCT 24849718 Query 6022 TGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCGCCGTTC 6081 |||||||| || || | | | ||| || ||||||| |||||||||||||| | | Sbjct 24849719 TGGGGTAACGGCTGCGCTGATCCAGAATACCCCGGAGTATACACTGAAATCGCAAATTAC 24849778 Query 6082 CGACACTGGAT 6092 || ||||||| Sbjct 24849779 CGCGACTGGAT 24849789 Score = 93.3 bits (102), Expect = 2e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 5923 CAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAGACGCATGCCAAGGTGATTCGGGTGGC 5982 ||||| || || ||| |||| ||||||||||||| | || || ||||| || ||||| Sbjct 24872441 CAGATCTGCGCCGCTTTCCCAGCAGGTGGTAAAGACACCTGTCAGGGTGACTCTGGTGGA 24872382 Query 5983 CCGTTAGTTGTCGATAACCGCTTAGCTGGTATCGTGTCATGGGGTAATGGATGTGGTCGT 6042 ||| | ||| | | | || |||||| ||||| |||||||| |||||||||| | Sbjct 24872381 CCGCTGGTTATTGCTGGACGTCAAGCTGGAATCGTCTCATGGGGCAATGGATGTGCGAGG 24872322 Query 6043 ACAGGATGGCCCGGAGCTTACACTGAAATCGCGCCGTTCCGACACTGGATT 6093 | |||| || || | |||||||| || ||| | | || |||||||| Sbjct 24872321 AAGGGATACCCTGGCGTATACACTGAGATTGCGTCAGTTCGCGACTGGATT 24872271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 5897 AATCATGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAG 5956 || ||||||||||| | || | ||||| || || ||| |||| |||||||| | Sbjct 24870750 AACCATGGGGTGGTATTCCCCAGGGACAGATTTGCGCTGCTTTCCCAGCCGGTGGTAAGG 24870691 Query 5957 ACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATCG 6016 || | |||||||| ||||| ||||||||| | || | | | || |||||| || | Sbjct 24870690 ACACCTGCCAAGGCGATTCCGGTGGCCCGCTCGTCATTGCTGGACGACAAGCTGGAATTG 24870631 Query 6017 TGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCGC 6076 | || ||||| || || |||| | | |||| ||||||| |||||||| || ||| Sbjct 24870630 TCTCGTGGGGCAACGGCTGTGCCAGGAAGGGATACCCCGGAGTCTACACTGAGATTGCGG 24870571 Query 6077 CGTTCCGACACTGGAT 6092 | | ||| | ||||| Sbjct 24870570 CTGTTCGAGAATGGAT 24870555 Score = 86.0 bits (94), Expect = 3e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 5896 CAATCATGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAA 5955 ||||| |||||||| | || || ||||| || || || |||| || || || Sbjct 24867192 CAATCTTGGGGTGGAGTCCCCGAGGGACAGATTTGCGCTGCGTTCCCAGCTGGAGGCAAG 24867251 Query 5956 GACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAACCGCTTAGCTGGTATC 6015 ||| | ||||| || || ||||||||||| |||| ||| | || |||||| || Sbjct 24867252 GACACTTGCCAGGGCGACTCGGGTGGCCCACTAGTCATCGCTGGACGACAAGCTGGAATT 24867311 Query 6016 GTGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGAAATCGCG 6075 || |||||||| || ||||||| ||| | || | ||||||| ||| || ||| | || Sbjct 24867312 GTATCATGGGGCAACGGATGTGCTCGAAAGGGCTACCCCGGAGTTTATACCGAAGTAGCT 24867371 Query 6076 CCGTTCCGACACTGGAT 6092 | |||| ||||||| Sbjct 24867372 TCTTTCCAGGACTGGAT 24867388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276533046709294