Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq411 120 2e-22 seq409 120 2e-22 seq236 118 6e-22 seq412 116 2e-21 seq410 116 2e-21 seq1 95.1 6e-15 >seq411 Length=10315142 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 4526557 TAAAAAA--AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 4526614 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 4526615 CGCTCTAACCAACTGAGCTAATGGGCC 4526641 >seq409 Length=1876529 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||| ||| ||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 467241 TAATAACAAAA-AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 467299 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 467300 CGACGCTCTAACCAACTGAGCTAATGGGCC 467329 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| || ||| ||||||||||||| |||||||||| || ||||||||||||||||| Sbjct 468157 TAAGAATAAA--AAATTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCA 468100 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 468099 CGACGCTCTAACCAACTGAGCTAATGGGCC 468070 >seq236 Length=27037145 Score = 118 bits (130), Expect = 6e-22 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 12929266 AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 12929325 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| Sbjct 12929326 CAACTGAGCTAATGGGCCG 12929344 >seq412 Length=3535154 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1817681 AAAACAAAAAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1817740 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1817741 GCTCTAACCAACTGAGCTAATGGGCC 1817766 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1817844 AAAACAAAAAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1817903 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1817904 GCTCTAACCAACTGAGCTAATGGGCC 1817929 >seq410 Length=4553683 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 95452 AAAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 95511 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 95512 CAACTGAGCTAATGGGCC 95529 >seq1 Length=33571687 Score = 95.1 bits (104), Expect = 6e-15 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| |||| | ||| |||||||||| ||||||||||||||||||||| Sbjct 8450494 AAGAAAAAA--AAAATGGCTCGTGAGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 8450437 Query 11501 GACGCTCTRACCAACTGAGCTAA 11523 |||||||| |||| ||||||||| Sbjct 8450436 GACGCTCTAACCAGCTGAGCTAA 8450414 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261471766137448