Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq160 86.0 6e-13 seq438 82.4 8e-12 >seq160 Length=350786 Score = 86.0 bits (94), Expect = 6e-13 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 679 CGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGGGCAC 738 || || || ||| ||| ||| |||| |||||||| || || | || | |||||| Sbjct 209779 CGCGAACAGTCACAGAGAACATGCTTCGCATCTTCGTTAGCTTCCAAACAAGCTGGGCAG 209720 Query 739 TCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCCTGAT 798 | ||| ||| || || | ||||| ||||| |||||||| || ||||| || | | Sbjct 209719 TTTGGACAATCCTCTATTTTTAATCGGTGCAGATAAGCCCGGAAGCATCCGTGACCGGTT 209660 Query 799 AACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAG-CCAAACGTTGAT 857 || | |||||| || || ||||||||||| || || || | || |||| | | || Sbjct 209659 AAAAACTGTGTGAGGTAGTAGTTGACCTCCCCATG-TTCTCTTCCAGTCCAATCCTCTAT 209601 Query 858 CCTTGGTATGAGACGATGCGTCCATC 883 ||||||| || ||||| ||||||| Sbjct 209600 TTTTGGTATAAGGCGATGTGTCCATC 209575 >seq438 Length=211448 Score = 82.4 bits (90), Expect = 8e-12 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 763 CGGTGGAGATACGCCCGGAAACAGCCGTGTCCTGATAACATCTGTGTAAGATAATAGTTG 822 || || ||||| |||||||| || ||||| || | ||| | ||||||||| || |||||| Sbjct 155508 CGATGCAGATAAGCCCGGAAGCATCCGTGCCCGGTTAAAAACTGTGTAAGGTAGTAGTTG 155567 Query 823 ACCTCACCGTGACTCCGGTTTAG-CCAAACGTTGATCCTTGGTATGAGACGATGCGTCCA 881 ||||| || || || || || |||| | || || ||||||| || ||||| ||||| Sbjct 155568 ACCTCCCCATG-TTCTCTTTCAGTCCAATCCTTTATTTTTGGTATAAGGCGATGTGTCCA 155626 Query 882 TC 883 || Sbjct 155627 TC 155628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50946807582828