Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq1323 118 1e-22 seq379 95.1 2e-15 >seq1323 Length=15333 Score = 118 bits (130), Expect = 1e-22 Identities = 292/439 (67%), Gaps = 13/439 (3%) Strand=Plus/Minus Query 12737 TATTGACTTATATCAATTTCGCCCCAGCTCTCTCGAAATCTTTTAAATAAAGGTACATCA 12796 ||||||||| |||||| | | ||| || || |||||||||| ||||| ||||| | Sbjct 4011 TATTGACTTTGATCAATATTGTTCCAACTATCGTGAAATCTTTTGAATAATGGTACGTTT 3952 Query 12797 GGACCTGAGGTTGTA---GGTA--TTTTAAGTTCAAAAACACCCCTGAGGATAAGTTCAA 12851 || || | ||||| |||| |||| || |||| ||||| | |||| ||| Sbjct 3951 GGTCC---GTTTGTACCAGGTAGTTTTTCAG--CAAATACACCAGCTAAAATAATTTCGT 3897 Query 12852 ATATGTGATGCCTGCAAGGCAAATACAATAGttttttttCAAGCAACCGTTCCAGTGAAA 12911 ||||||| || | ||||| || || | ||| | | || | | | || | || Sbjct 3896 ATATGTGGTGACGACAAGGTAAGTAAAGTAGATCATGGTCTAAATATTGCTCTAAAATAA 3837 Query 12912 CTGCAGCTCCTTTACTTGATCCTAGATTTGCAGCAGTAGTATCACAGCATAGAGCTTTAA 12971 |||| || || |||| | |||| ||| | | | | |||||||| |||| ||||||| Sbjct 3836 CTGCTGCGCCATTACGGTAACCTAAATTAGAATTATTTGTATCACAACATAACGCTTTAA 3777 Query 12972 TAAAGTCTGGAATTCCCCAATCATTAATAGCGTCAAACATTGCATCAGCTTGCGACTGAC 13031 | | ||| | ||||||||||| | ||| | ||||| || ||||||| || Sbjct 3776 TTGATTCTTTTAAACCCCAATCATTTAGAGCCCTGTAAATTGCGTCGGCTTGCGTTACAC 3717 Query 13032 CTGTTCCATCATCTAGTACTGGGATCGCTAATATTTTTTCAATTTGCCCACAACTCAATA 13091 || | || || || | |||| | ||| ||||| ||| ||| ||| | ||| | Sbjct 3716 CTTTACCGTCTGGTAATGCTGGTACATCTATAATTTTCTCACTTTTACCATTAGTCACAA 3657 Query 13092 CAACTGGTAGTCGTTCTTTATTTTTTCCACTTGACGTTTTT---AAAATTTTTCCATCCC 13148 ||| ||||| || || ||||||| ||| || || | | | ||||||||| |||| Sbjct 3656 CAATTGGTAATCTGTCAATATTTTTACCAATTATCGAATCTGGAATAATTTTTCCGTCCC 3597 Query 13149 AGTGAAGAACACTAGCATT 13167 | |||||||| |||||| Sbjct 3596 AATGAAGAACTGCAGCATT 3578 Score = 118 bits (130), Expect = 1e-22 Identities = 292/439 (67%), Gaps = 13/439 (3%) Strand=Plus/Minus Query 12737 TATTGACTTATATCAATTTCGCCCCAGCTCTCTCGAAATCTTTTAAATAAAGGTACATCA 12796 ||||||||| |||||| | | ||| || || |||||||||| ||||| ||||| | Sbjct 8643 TATTGACTTTGATCAATATTGTTCCAACTATCGTGAAATCTTTTGAATAATGGTACGTTT 8584 Query 12797 GGACCTGAGGTTGTA---GGTA--TTTTAAGTTCAAAAACACCCCTGAGGATAAGTTCAA 12851 || || | ||||| |||| |||| || |||| ||||| | |||| ||| Sbjct 8583 GGTCC---GTTTGTACCAGGTAGTTTTTCAG--CAAATACACCAGCTAAAATAATTTCGT 8529 Query 12852 ATATGTGATGCCTGCAAGGCAAATACAATAGttttttttCAAGCAACCGTTCCAGTGAAA 12911 ||||||| || | ||||| || || | ||| | | || | | | || | || Sbjct 8528 ATATGTGGTGACGACAAGGTAAGTAAAGTAGATCATGGTCTAAATATTGCTCTAAAATAA 8469 Query 12912 CTGCAGCTCCTTTACTTGATCCTAGATTTGCAGCAGTAGTATCACAGCATAGAGCTTTAA 12971 |||| || || |||| | |||| ||| | | | | |||||||| |||| ||||||| Sbjct 8468 CTGCTGCGCCATTACGGTAACCTAAATTAGAATTATTTGTATCACAACATAACGCTTTAA 8409 Query 12972 TAAAGTCTGGAATTCCCCAATCATTAATAGCGTCAAACATTGCATCAGCTTGCGACTGAC 13031 | | ||| | ||||||||||| | ||| | ||||| || ||||||| || Sbjct 8408 TTGATTCTTTTAAACCCCAATCATTTAGAGCCCTGTAAATTGCGTCGGCTTGCGTTACAC 8349 Query 13032 CTGTTCCATCATCTAGTACTGGGATCGCTAATATTTTTTCAATTTGCCCACAACTCAATA 13091 || | || || || | |||| | ||| ||||| ||| ||| ||| | ||| | Sbjct 8348 CTTTACCGTCTGGTAATGCTGGTACATCTATAATTTTCTCACTTTTACCATTAGTCACAA 8289 Query 13092 CAACTGGTAGTCGTTCTTTATTTTTTCCACTTGACGTTTTT---AAAATTTTTCCATCCC 13148 ||| ||||| || || ||||||| ||| || || | | | ||||||||| |||| Sbjct 8288 CAATTGGTAATCTGTCAATATTTTTACCAATTATCGAATCTGGAATAATTTTTCCGTCCC 8229 Query 13149 AGTGAAGAACACTAGCATT 13167 | |||||||| |||||| Sbjct 8228 AATGAAGAACTGCAGCATT 8210 >seq379 Length=233974 Score = 95.1 bits (104), Expect = 2e-15 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 12844 AAGTTCAAATATGTGATGCCTGCAAGGCAAATACAATAGttttttttCAAGCAACCGTTC 12903 || ||| || || ||||| | ||||| |||||||| | | | ||| || ||| |||| Sbjct 121266 AATTTCGAAGATATGATGACGACAAGGTAAATACAACAAGTCTGTTTGTAGTAACTGTTC 121207 Query 12904 CAGTGAAACTGCAGCTCCTTTACTTGATCCTAGATTTGCAGCAGTAGTATCACAGCATAG 12963 || | ||||||||||| || | || || | || | ||| || ||||| ||||||| Sbjct 121206 CAATATGACTGCAGCTCCATTTGTAGAACCCAAGTTCGAAGCTGTTGTATCGCAGCATAA 121147 Query 12964 AGCTTTAAT-AAAGTCTGGAATTCCCCAATCATTAATA--GCGTCAAACATTGCATCAGC 13020 || ||||| |||| || || ||||||||| |||| || | | | || ||||| || Sbjct 121146 TGCCTTAATCGAAGT-TGTAAGACCCCAATCA--AATAACGCTTTATAAATAGCATCCGC 121090 Query 13021 TTGCGACTGACCTGTTCCA 13039 ||||| | |||||||||| Sbjct 121089 TTGCGCTTTACCTGTTCCA 121071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63301136440842