Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq351 183 2e-42 seq1380 156 3e-34 seq1359 156 3e-34 seq414 123 2e-24 seq61 102 6e-18 seq424 86.0 4e-13 seq314 84.2 2e-12 seq216 78.8 7e-11 seq108 78.8 7e-11 >seq351 Length=400098 Score = 183 bits (202), Expect = 2e-42 Identities = 175/224 (78%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 10952 TTTTCTACCCTCCGACCGGAAAGTGGCAACA---------CTGCGGTAAACGAAATTGCC 11002 |||||| ||||||| |||| ||| | |||| |||| |||||| |||||| Sbjct 39282 TTTTCTTCCCTCCGTCCGGGAAGCGCCAACTTTCTGGCCGCTGCATAAAACGATATTGCC 39341 Query 11003 ACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGTAAAAAGT-AAA 11061 || |||||| |||||| |||||||||||| ||||||| || |||||||||||| ||| Sbjct 39342 ACTTTCCGGTGACGTCGAGCAGAAAAATAGAATACACATCTAGGCCAGTAAAAAAAGAAA 39401 Query 11062 CCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCT 11121 |||||| |||||||| | ||||| | ||| ||| | || ||||| | ||||||||| Sbjct 39402 GTCTCAGATCACATGTTCATTAACCTTGGCTTTGCCTTGACCGACAATTATATGTGATCT 39461 Query 11122 GAGACtttttttATTTTACTGGCCTAGGTATGTGATATACTATT 11165 |||| ||| |||||||||||||| ||||||||||| ||||||| Sbjct 39462 CAGACATTTCTTATTTTACTGGCCGAGGTATGTGATCTACTATT 39505 Score = 114 bits (126), Expect = 9e-22 Identities = 106/133 (80%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 6714 TACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAA 6773 ||||| || || |||| |||||||||||| ||||||||| ||||||| |||| || Sbjct 39491 TACCTCGGCCAGTAAAATAAGAAATGTCTGAGATCACATATAATTGTCGGTCAAGGCAAA 39432 Query 6774 GCCGAGGTCAACAAACATGTGGTCTGAGGCTTTC-TTATTTACTGTCCAAGATTTGTATG 6832 ||| |||| || |||||||| |||||| ||||| || ||||||| || |||| ||||| Sbjct 39431 GCCAAGGTTAATGAACATGTGATCTGAGACTTTCTTTTTTTACTGGCCTAGATGTGTATT 39372 Query 6833 CGATTTTTCTTCT 6845 | |||||||| || Sbjct 39371 CTATTTTTCTGCT 39359 >seq1380 Length=11128 Score = 156 bits (172), Expect = 3e-34 Identities = 145/183 (79%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 10983 CTGCGGTAAACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACC 11042 ||||| ||||||| || || | ||||||| ||||| ||| | || || |||||||||| Sbjct 1698 CTGCGCGAAACGAACTTACCGCTTTCCGGCACCGTCGAGCAAACAAGTAATATACACACC 1757 Query 11043 TTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGC 11102 | ||| ||||||| ||| ||||||| ||||||||| | ||||| ||| |||| | Sbjct 1758 TGGGCT-GTAAAAAACAAAGCCTCAGATCACATGTTTATTGACCTCAGCTTTGACTCGAC 1816 Query 11103 CAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCCTAGGTATGTGATATACT 11162 | ||||| | |||||||||||| | ||| |||||||||||||||| |||||| || |||| Sbjct 1817 CGACAATTAAATGTGATCTGAGGCATTTCTTATTTTACTGGCCTACGTATGTAATCTACT 1876 Query 11163 ATT 11165 ||| Sbjct 1877 ATT 1879 Score = 105 bits (116), Expect = 5e-19 Identities = 95/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 6714 TACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAA 6773 ||| |||| || |||| ||||||||| |||||||||||| ||||||| ||| | || Sbjct 1865 TACGTAGGCCAGTAAAATAAGAAATGCCTCAGATCACATTTAATTGTCGGTCGAGTCAAA 1806 Query 6774 GCCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTAT 6831 || |||||||| ||||||||| ||||||||||| || ||||| | || || | ||||| Sbjct 1805 GCTGAGGTCAATAAACATGTGATCTGAGGCTTTGTTTTTTACAG-CCCAGGTGTGTAT 1749 >seq1359 Length=145664 Score = 156 bits (172), Expect = 3e-34 Identities = 145/183 (79%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 10983 CTGCGGTAAACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACC 11042 ||||| ||||||| || || | ||||||| ||||| ||| | || || |||||||||| Sbjct 140209 CTGCGCGAAACGAACTTACCGCTTTCCGGCACCGTCGAGCAAACAAGTAATATACACACC 140150 Query 11043 TTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGC 11102 | ||| ||||||| ||| ||||||| ||||||||| | ||||| ||| |||| | Sbjct 140149 TGGGCT-GTAAAAAACAAAGCCTCAGATCACATGTTTATTGACCTCAGCTTTGACTCGAC 140091 Query 11103 CAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCCTAGGTATGTGATATACT 11162 | ||||| | |||||||||||| | ||| |||||||||||||||| |||||| || |||| Sbjct 140090 CGACAATTAAATGTGATCTGAGGCATTTCTTATTTTACTGGCCTACGTATGTAATCTACT 140031 Query 11163 ATT 11165 ||| Sbjct 140030 ATT 140028 Score = 105 bits (116), Expect = 5e-19 Identities = 95/118 (81%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 6714 TACCTAGGGCAATAAAGTAAGAAATGTCTCAGATCACATGTAATTGTTTACTGAGGCGAA 6773 ||| |||| || |||| ||||||||| |||||||||||| ||||||| ||| | || Sbjct 140042 TACGTAGGCCAGTAAAATAAGAAATGCCTCAGATCACATTTAATTGTCGGTCGAGTCAAA 140101 Query 6774 GCCGAGGTCAACAAACATGTGGTCTGAGGCTTTCTTATTTACTGTCCAAGATTTGTAT 6831 || |||||||| ||||||||| ||||||||||| || ||||| | || || | ||||| Sbjct 140102 GCTGAGGTCAATAAACATGTGATCTGAGGCTTTGTTTTTTACAG-CCCAGGTGTGTAT 140158 >seq414 Length=4040552 Score = 123 bits (136), Expect = 2e-24 Identities = 136/182 (75%), Gaps = 13/182 (7%) Strand=Plus/Plus Query 10983 CTGCGGTAAACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACC 11042 ||||| ||||||| ||||| | ||||||| ||||| | ||||||| || |||| |||| Sbjct 105822 CTGCGTGAAACGAAGTTGCCGCTTTCCGGCACCGTCGAGGAGAAAAACAGGATACGCACC 105881 Query 11043 TTGGCCAGTAAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGC 11102 | |||||||||||| ||| |||||| || ||||| || || ||| | Sbjct 105882 TGGGCCAGTAAAAAAGAAAGGCTCAGATCATCTGTTT-----------ATTGACTTCGAC 105930 Query 11103 CAACAATCACATGTGATCTGAGACtttttttATTTTACTGGCC--TAGGTATGTGATATA 11160 | ||||| ||| ||| |||||||| ||| |||||||||||| | ||||||||| || || Sbjct 105931 CGACAATTACACGTGTTCTGAGACATTTATTATTTTACTGGTCTATAGGTATGTAATCTA 105990 Query 11161 CT 11162 || Sbjct 105991 CT 105992 >seq61 Length=338657 Score = 102 bits (112), Expect = 6e-18 Identities = 105/134 (78%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 11035 TACACACCTTGGCCAGTAA-AAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTT 11093 ||| |||| |||| | || |||| || |||||| | |||||||| || ||||| ||| Sbjct 13095 TACGCACCACGGCCGGGAACAAAG--AATGCTCAGATCGCATGTTTGCCACCCTCGGCTT 13038 Query 11094 CACCTCGGCCAACAAT-CACATGTGATCTGAGACtttttttATTTTACTGGCCTAGGTAT 11152 | |||||| | |||| |||||| |||||| ||| || | |||||| | |||||||||| Sbjct 13037 CGCCTCGGGCGGCAATACACATGCGATCTGGGACATTCTATATTTTCCCGGCCTAGGTAC 12978 Query 11153 GTGATATACTATTT 11166 || ||||||||||| Sbjct 12977 GTAATATACTATTT 12964 >seq424 Length=259781 Score = 86.0 bits (94), Expect = 4e-13 Identities = 102/134 (76%), Gaps = 6/134 (4%) Strand=Plus/Minus Query 11035 TACACACCTTGGCCAGTAA-AAAGTAAACCCTCAGACCACAT--GTTTGTCAACCTCGAC 11091 ||| |||| |||| | || |||| | || ||||| | || ||||| || ||||| | Sbjct 204315 TACGCACCATGGCTGGGAACAAAGAATAC--TCAGATCGTATTTGTTTGCCACCCTCGGC 204258 Query 11092 TTCACCTCGGCCAACAAT-CACATGTGATCTGAGACtttttttATTTTACTGGCCTAGGT 11150 |||||||||| | ||||| | |||||||||| || || |||||||| | |||||||| Sbjct 204257 TTCACCTCGGGCGACAATACGCATGTGATCTTGGATATTCTTTATTTTCCCAGCCTAGGT 204198 Query 11151 ATGTGATATACTAT 11164 | || ||||||||| Sbjct 204197 ACGTAATATACTAT 204184 >seq314 Length=14808294 Score = 84.2 bits (92), Expect = 2e-12 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 11065 TCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCACATGTGATCTGAG 11124 ||||| | |||||||| || |||| |||| ||| || | | || ||| |||||| | Sbjct 7651732 TCAGATCGCATGTTTGCCACTCTCGGCTTCGCCTAGGGCGGAATACAAATGCGATCTGGG 7651673 Query 11125 ACtttttttATTTTACTGGCCTAGGTATGTGATATACTATT 11165 || || |||||||| | ||||||||||||| |||||||||| Sbjct 7651672 ACATTCTTTATTTTCCCGGCCTAGGTATGTAATATACTATT 7651632 >seq216 Length=419902 Score = 78.8 bits (86), Expect = 7e-11 Identities = 106/143 (74%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 11026 AAAATAGTATACACACCTTGGCC-AGTAAAAAGTAAACCCTCAGACCACATGTTTGTCAA 11084 ||||| | ||| |||| ||| || | |||| || |||||| |||||||| || Sbjct 36430 AAAATCGCGTACGCACCACGGCTGAGAACAAAG--AATGCTCAGATTGCATGTTTGCCAC 36373 Query 11085 CCTCGACTTCACCTCGGCCAACAAT-CACATGTGATC-TGAGACtttttttATTTTACTG 11142 ||| | ||||||||||| |||| |||||| |||| || | | || || ||||| | | Sbjct 36372 CCTTGGCTTCACCTCGGGTGGCAATACACATGCGATCTTGGGTCATTCTTCATTTTTCCG 36313 Query 11143 GCCTAGGTATGTGATATACTATT 11165 |||||||| ||| |||||||||| Sbjct 36312 GCCTAGGTGTGTAATATACTATT 36290 >seq108 Length=568500 Score = 78.8 bits (86), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 11064 CTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAAT-CACATGTGATCTG 11122 |||||| | |||||||| || | ||| ||| ||||| | |||| || ||| |||||| Sbjct 103271 CTCAGATCGCATGTTTGCCACCATCGGCTTTGCCTCGAGCGGCAATACAAATGCGATCTG 103212 Query 11123 AGACtttttttATTTTACTGGCCTAGGTATGTGATATACTATTTA 11167 | || |||||||| | |||||||||| || |||||||||||| Sbjct 103211 GGTTATTCTTTATTTTCCCGGCCTAGGTACGTAATATACTATTTA 103167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35677552262800