Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nasonia_20vitripennis_20[refseq_20GCF_5F000002325.3_202012-11-28] 6,098 sequences; 295,780,872 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 188 9e-43 seq14 114 2e-20 seq410 96.9 4e-15 >seq1 Length=33571687 Score = 188 bits (208), Expect = 9e-43 Identities = 317/456 (70%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || || || ||||||||||||| |||||||||||||||| |||||||| || | Sbjct 24628368 TCAAATTCCTCTCCCCAAACATCAGGTAATCCAGGACATTCATGTGGACACATTAAACTC 24628427 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 |||| | ||| || |||| ||||| || | || || ||||| | ||| ||| || Sbjct 24628428 CACTTTGTGTCCTCAAGAACTCTCTTCATGAACAAGTCCGGGATCCATAAAGC-ATAGAA 24628486 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || ||||| | ||| | ||| || || ||||| |||||||| |||||||| || | | Sbjct 24628487 AAGGTCTCTCGCTCTGTTTTCTTCTTTACCTGTGTTCTTTTTGAGATCGAGAAATTCGAA 24628546 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 || |||| ||||||||||||||| || ||||| | ||||||| | |||||||| || Sbjct 24628547 GATGTCAGCATGCCACGGTTCCAAATACATGGCAAACGCTCCAGGTCTCTTGTTTCCACC 24628606 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63436 ||||| | ||| | || |||||||| || ||||| | ||| |||| | ||| || || Sbjct 24628607 TTGATCGACGTAACGCGCAGTGTTATTGTATACTCTAATCATAGGAACTAAACCATTAGA 24628666 Query 63437 TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63496 || ||| || || || || || | ||| |||| | ||| | || | ||| Sbjct 24628667 TACACCGTTTGTGCCAGAAATTCGAGTACCAGTGGCTCTTATAGTGTGAACACTCAAACC 24628726 Query 63497 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTC 63556 || || || || ||| || ||| || |||| || | || ||||| || || || Sbjct 24628727 AATGCCACCAGCAGATTTGCTGACTAAAGCACATCTCTTCAGTGTATCATAAATTCCTTC 24628786 Query 63557 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || || || |||| |||| || ||||| || Sbjct 24628787 AATACTGTCTTCAGTCATTGTAAGAAGGAAACAACT 24628822 Score = 152 bits (168), Expect = 6e-32 Identities = 270/391 (69%), Gaps = 7/391 (2%) Strand=Plus/Plus Query 62109 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62168 ||||| || | ||| | ||| ||| ||||| |||||||| || | || ||||||||| Sbjct 24627100 GCTATGTGTACATTTAGAGACTGAGACTGATCAATGAAGGCACCTCGATCCGCAGCCATT 24627159 Query 62169 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCT 62228 || | || |||||||| | ||| ||||| | ||||| || | | ||| | || || Sbjct 24627160 TTCAAAATGGTCTTTTGCGAAATCTCCCAGACTGTTTTGTACAGTTTCTTCAATTCATCA 24627219 Query 62229 GGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62285 |||| ||| | ||||||| || || | ||| || || |||||| ||||| Sbjct 24627220 GGAATCCTTGCAACGTTCTGAACCGAACCGTTGTTTGCGATTATTTCATTCTTCATCTCC 24627279 Query 62286 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62345 || | ||| | | || || || || || | | | ||| ||||| || || || ||| Sbjct 24627280 TCGTCCCACAGATCCCTGTCTGTCAAGTCTTTCAACAAATGAGGATTGACGACCTGGAAT 24627339 Query 62346 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA 62405 |||||||| | || | || |||||||| || || || || || || | ||| || || Sbjct 24627340 TCTCCAGAAAGAACACGCCTGGTGTAAATGTTGCTTGTGTAGGGCTCTATCGATTCGTTG 24627399 Query 62406 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62465 || ||||||||||| || || || || || ||||| || || | || ||| ||| | | Sbjct 24627400 TTGCCCAAAATTTGTGCGGTCGAAGCTGTTGGCATTGGCGCAAGTAACAAAGAATTGCGA 24627459 Query 62466 AGACCGTATGTTCTG--ATTTTATCTTTTAG 62494 | ||| |||||||| |||||| |||| || Sbjct 24627460 ACACC--ATGTTCTGCAATTTTAGCTTTCAG 24627488 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 || |||| ||| || ||||| ||||||| ||| ||||| ||||||||||| ||||||||| Sbjct 24629345 CTGAATACTTTCTTGGTTTCTTTGTGTAAATTGGATACTGCTATTCTGGCTGCTAGAATG 24629404 Query 64017 GCATAATCCG 64026 |||||||||| Sbjct 24629405 GCATAATCCG 24629414 >seq14 Length=421909 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 || || || ||||||| ||| | ||||||| |||||| | | | | ||| |||||| Sbjct 277594 TTTTTCATTTCATCATCCCAAAGATTTCTCTTTGTTAAATCATTTAATAAATGTGGATTA 277535 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || | |||||||| ||||| || | | ||||||||||||||| || || || ||| Sbjct 277534 ACAATAATGAATTCTCCTGACAAAACACGTCTAGTGTAAATATTACTTGTGTAAGGCTCC 277475 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446 || || ||||| |||||||| || ||||| || || || || ||||| ||||| Sbjct 277474 ACTGATTCATTGTTTCCCAATATCTGAGCTGTAGAAGCTGTTGGCATTGGTGC 277422 Score = 102 bits (112), Expect = 1e-16 Identities = 200/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62843 ||||||| ||| | ||| |||||||||| | ||| | ||| ||| || || || Sbjct 276917 GGATAATGATTCAGATCAATAATTTTATCTAAATTCTTAGCAACAGTTTTAACAACTTCT 276858 Query 62844 TTCAGTTTGAGAAAATCAAATCGCC------CATCTATTACAAACATGTTCAAGGCAACA 62897 |||| ||| ||||||| | | || | |||||||| || | |||| Sbjct 276857 TTCAATTTTAGAAAATTGTAGTACTGTGTTTCAACATCAACAAACATATTAACAGCAATG 276798 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 ||||| | |||||| || ||||| || || | | | |||||||| || |||||||| Sbjct 276797 GATGCTAAATTACACACTGCTACTTCGTTTGGAGAAGAGTATTGTATAATTTCAGTGCAT 276738 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 | |||||| | || |||||||| | |||||||||||| || || || ||| Sbjct 276737 AAATTACTGCTTTTAATAGTTCCAAGATTTTGTTGATTTGATTTACGATTGCAGTGATCT 276678 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63073 ||||| || || | ||||| |||||||||| || | || || ||| || |||| Sbjct 276677 TTATAGAGCATATAAGGAGTTCCAGTTTCAACTTGTGCTTTTAAAATGGCAGTCCA 276622 Score = 89.7 bits (98), Expect = 6e-13 Identities = 199/292 (68%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAG-GTAGGAGAAGCGTGCGT 63646 || || |||||||| || | |||| | ||| ||| ||| |||||||| || || || Sbjct 275836 CACCTGGACATTTGTTGGTGTATAGTACATGCAAAAAAAAAGTGTAGGAGATGCATGTGT 275777 Query 63647 AAACCATTTTTCAGAAAGTAGA-TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705 || | ||||||| ||| | || || ||||| || || || | |||| || || Sbjct 275776 GAAGTAACGTTCAGAA-GTATAATTATATGTCTCTATGACTTTTTCAAGATCCTCTTTAT 275718 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 ||| ||||||| || | ||| | ||| | || |||| ||||| | ||||| ||| Sbjct 275717 GAAGAGCTACTGCAACTCTCATAAGCATATCTTGTGGTCGCTCAACCA-CTTGTCCATTA 275659 Query 63766 TTT-TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63824 | | || ||||| ||| ||||| |||||||| ||||||||||| | ||| ||| Sbjct 275658 ATCCTGAATAAGTAACTTTTCTCCAAGGTTTTAAATCCAAAATAGTTAAAGACAAAATCT 275599 Query 63825 CGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATAT 63876 | || || || | || || ||| |||| |||| ||| | || ||||| Sbjct 275598 CTGTCATAGTCTATGGCAGAATTTAGTCTATCTTTATGTTTTTGAATTATAT 275547 >seq410 Length=4553683 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| || ||||||||||||||||||| ||| || || ||||| || | |||||| Sbjct 2615930 TACATTTCAGAGTGAATGTTTTCAATGGCCACCTGGAAGCCATAGAAGCAGCGAGCCTCA 2615871 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 || | ||| ||||| | || || || ||| ||| ||||| || || || || | Sbjct 2615870 GTCACCTGCACTTCCTGGCTGAAACGCTCAACCAGATTCTCATTGACAATACCATCCGAG 2615811 Query 33715 GCTGCAAAAAACGCCAATACATG 33737 || ||||| || ||||| ||||| Sbjct 2615810 GCAGCAAAGAATGCCAAAACATG 2615788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622899715849680